Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1535 ATGGATGGGCGAAGGCATTCAGTTGATATTCCTATTTCAAAAACTCTTGTGGCACTGAGGAGGGTCAGGTCACTGAGGGATCCGTCAACTAATTGCATTAGCAAACTCTCTCCTTTGATTGATAATGTGCAATGGGAAAATGGTTCCGGTAATGGGATTTCGCTGAGGTTCTTGGATGCTTCTCATGCATGTGGTTCTGATGATAATGATGTTTTAAGATATAAGAATTTAGAATTTAAGGGACAAAGAGAGCAGGATACTACTGATTTTGAACTGAATTGTGGCCTGTTGAACTCTAAGATGAACTATTGTGGGGTCTCAGGTCAGGAAAAGCAAAAAGAAGATGAACTAACTAAATCACCAAGTGAAAGCTGTTGTAGCAACCATGGGGGCAGAGGATTGGATTTGACTTGCATCATGCCTACTGTTAATCATTTGAAGGATGCGGAATCACTCTACTTATCATCACAATTAGGGAGAAGAGATCACTCAAAGTCAAGCCGAAAATCGCAGCGCAAGACTCAAGTGAAGCCATCTGAAGTGATGGGTGATATTGCACGCCATGTAGGTAGTCCATGCCTTTCTGCTGGTGATGCTCTATCAGTAAGTCAAGATGTTGATGCTTTAGATAACCACAATGGATGTGAAATAAGCTTTTGTTGGTCAAAATCCCCAAGGTTTAGAGAATCAAATCATTATTCTGAGCTAGAAGGCCTTCCCTTGTTGTCGCAGCATGTCAATGAGACTGATCTTTGTGGGCATAGAAACATGAGACACATTGGTGGTGAAGGCAGTCCAAGTTTGGAAACTCCAAGAAGTTTATCTATGAAATTCAGACCAAAATCTTTCAGTGATTTGGTGGGCCAGAATGTGGTTGGAAGGTCTCTTTTGGGTGCCATTTCCAGTGGAAGGATAACATCATTTTACCTCTTTCATGGCCCACGTGGTACCGGCAAGACCTCAGCATCCAGGATATTTGCTGCAGCATTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTATGTGTAGAGAATGTGTTCTGTTCTTTTCTGGAAGAAGTAAGGATGTTAAGGAAGTGGATTCTTTGAGAATCAATCATGCAGAGAAGGTTAAATCCCTTGTTAAGAATGCATGCATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTTTTGCATGGGGAAACATGGGCTAGTCTTTTGAATAGCCTAGATAATGTTTCTCAACATGTGGTTTTTGTGATGATCTCTCCTGATTTGGATAACCTCCCTAGAAGTGTGGTTTCTCGAGCTCAGAGGTATCACTTCCCGAAGATTAAAGATGCTGACATTGCAAGCAGACTGGGGAAAATTTGTGTTGAAGAAGGTCTTCATTTTGAGCAAGTTGCTTTGGACTTTATTGCTGCTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGGTCACACTTTCCTTAGCCCATGAGCTCACTGGGGTTGTTTCGGATGATGAATTGCTTGATTTGTTGGACCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGCTGATGAGATCAAGGATAGATCCTTTACAACTCGTATCACAGCTGGCGAATCTTATTATGGACATTCTTGCAGGGAAATGTGAAGTTGGTGGTTCTGAAATCAGAAGAGCTTCTACTAGACATACCTCGGAAGCAGACCTGCAGAAATTAAGTCATGCATTGAGAGTACTTTCTGAAACAGAGAAGCAATTAAGAATTTCTAAGAATCAAAAAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCGCTGTAGACTATTCGTCTGTGGATGCAAATGATGCCAAGTTATATTTGAGAGCTGTGCCAAATAAGGATGGTGATTTCTGCAGCACATCATCTACAGGAGAGAGCTTGAAGCATCTAGCTACAGGTCACTCGGATGAGAAGTCATCTAGATTAGGAGTGCAGGAAGATCACAAAGGAACATTGGATTCCATATGGCATAAAGCTACAGACATATGTCAATCAAGAAGGTTCAAGACTTTTCTCAGGAAGCAGGGGAAGTTGTCTTCGCTTTGTGTTAATCAAGGCCTTGCAGTTGCTGAGTTGGAGTTCCATCACCGCGACTGTGTAACTAGAGCTGAGAAGTCATGGAAACTGATTGCAACTTCCCTTCAGTTCATATTGGGTTGTAACATTGAGCTCAGGATCAATTATGTACCTTGTACGTCAGATTCTAAGTATGCTAAATTGAAGAGGTCATCTTTCAATTTCTTTAGCTGTTCCCGTAGAATTCTACGGAAATCACTATCATTTAATGAACAAGGAAGTGAATCAGACTATGCTGATCAAACTTATCAAAAGCCCATGATGAAGGATCAAACTCTAACTTGTTCCTCTGATTGTGGATCTCGGGTACCACCACTTGAGTCTTATGGTGGAATGCAGGTTGTAAGAGCTTTGAGAAGTTGTGAAGGGAATTTGGTAAGCTCAGGGAAAACATTTTTGAATATACCAGGCCAAGAGACTCCTAAGATTTCATGTTCGACAGTTGATTCTCTCAATGAAGAGGGATGCAATTTCGTACAAGTAGCTTCATCAACCCTTGATTTAGACTATCAGTCTAACTGTTTTCCTGGAACCCTTTGGCTTCATAAGAAGTTCTACTCTTCACATGCCTCAAAACGGAGGGATTTTATTTTATCAAGCCCATCTCGCAGCTCTAACTACTGTTCCAAGGCTGCCGAGTTAAAGTAG 2808 0.4156 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCISKLSPLIDNVQWENGSGNGISLRFLDASHACGSDDNDVLRYKNLEFKGQREQDTTDFELNCGLLNSKMNYCGVSGQEKQKEDELTKSPSESCCSNHGGRGLDLTCIMPTVNHLKDAESLYLSSQLGRRDHSKSSRKSQRKTQVKPSEVMGDIARHVGSPCLSAGDALSVSQDVDALDNHNGCEISFCWSKSPRFRESNHYSELEGLPLLSQHVNETDLCGHRNMRHIGGEGSPSLETPRSLSMKFRPKSFSDLVGQNVVGRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGMCRECVLFFSGRSKDVKEVDSLRINHAEKVKSLVKNACIPPVSSRFKVFIIDECQFLHGETWASLLNSLDNVSQHVVFVMISPDLDNLPRSVVSRAQRYHFPKIKDADIASRLGKICVEEGLHFEQVALDFIAAKSCGSLRDAEMMLDQMSLLGKKVTLSLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCEVGGSEIRRASTRHTSEADLQKLSHALRVLSETEKQLRISKNQKTWFTAALLQLSAVDYSSVDANDAKLYLRAVPNKDGDFCSTSSTGESLKHLATGHSDEKSSRLGVQEDHKGTLDSIWHKATDICQSRRFKTFLRKQGKLSSLCVNQGLAVAELEFHHRDCVTRAEKSWKLIATSLQFILGCNIELRINYVPCTSDSKYAKLKRSSFNFFSCSRRILRKSLSFNEQGSESDYADQTYQKPMMKDQTLTCSSDCGSRVPPLESYGGMQVVRALRSCEGNLVSSGKTFLNIPGQETPKISCSTVDSLNEEGCNFVQVASSTLDLDYQSNCFPGTLWLHKKFYSSHASKRRDFILSSPSRSSNYCSKAAELK* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1535 935 CDD AAA 287 437 - -
Dod05g1535 935 Gene3D - 267 444 IPR027417 -
Dod05g1535 935 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 98 893 - -
Dod05g1535 935 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 273 618 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dod05g1535 935 Gene3D - 447 509 - -
Dod05g1535 935 Gene3D - 510 622 - -
Dod05g1535 935 Pfam DNA polymerase III, delta subunit 291 446 - -
Dod05g1535 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 496 IPR027417 -
Dod05g1535 935 MobiDBLite consensus disorder prediction 157 179 - -
Dod05g1535 935 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 98 893 - -
Dod05g1535 935 CDD HLD_clamp_pol_III_gamma_tau 446 509 IPR045085 -
Dod05g1535 935 SUPERFAMILY post-AAA+ oligomerization domain-like 511 621 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1535 Dod-Chr5 40244430 40250756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1535 265 601 Core DNA Replication Machinery Family AT1G21690 24.633 7.73e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1535 - - pvu:PHAVU_003G207500g 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1535 05 40244430 40250756 Dod05g1535 05 40244430 40250756 ECH
Dod05g1535 05 40244430 40250756 Dod09g0196 09 2712047 2716528 PCT