Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1531 ATGGCGGGGGGTTCTTCGGACCCCGGCGGCGGCGGCGGTGGCGGCGTGGAGGTGTTCCAGTGGCTGAAGTCACTTCCGGTGGCTCCGGAGTACAGTCCTACGGCGGCGGAGTTCCAGGATCCAATCTCCTACATTTTCAAGATCGAGAAGGAGGCATCCGCCTACGGAATCTGCAAGATCATCCCTCCGGTCCCTCCTCCGCCGAAGAAGTCCGCCGTGGCCAACCTCACGCGCTCCCGCCCGTCCTTCACGACGCGCCACCAGCAGATCGGGTTCTGCCCCCGCCGCCCACAGCCCGTCCGCCGCCCCGTGTGGCAGAGCCGCGAGACCTACACGCTCCGCGAGTTCGAGTCCAAGGCCAAGTCCTTCGAGAAAACCTACCTCAAGAAACACGCGCGGAGAGCGTGCGCCAGTGGCGGTGGGTCCCTCACTCCCCTCGAGGTCGAGACTTTGTACTGGAAGGCCACGTCGGACAAACCGTTTACCGTTGAGTACGCGAACGACATGCCGGGGTCGGCTTTCGTGCCGTTGCAGGAGGCCGTTGGGGAGGCGGTTGTGACGGTTGGGGAGACCGCGTGGAACATGAGGTGTGTCTCCAGGGCTAACGGTTCCTTGCTGAGGTTTATGAAGGAGGAGATTCCTGGCGTGACTTCGCCTATGGTTTATTTGGCCATGCTTTTCAGCTGGTTCGCTTGGCACGTTGAGGATCATGACCTCCACAGCTTGAATTACCTCCACATGGGTGCTCCCAAGACTTGGTATGGTGTCCCCAGGGATGCTGCTGTCGCCTTCGAGGAAGTTGTCAGGGTTCATGGTTATGGCGGGGAGGTTAACCCCCTTGTTACTTTCGCCATTCTTGGTGAGAAAACTACAGTGATGTCTCCAGAAGTATTGACCAGTGCAGGTGTTCCGTGCTGCAGATTAGTGCAAAATGCTGGGGAATTTGTTGTAACATTTCCAAGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGCTCGAGAATCCCTAGAGGCATCAGTGCTGAACCGCGGAGTTCTCGACTTAAAGATAAGAAAAAGGGTGAAGGAGAAGCTATAATTAAAGAACTATTTGTACAGGACGTCTTACAGAACAATGATCTGCTTCATGTCCTCGGCAAAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAAATGAGCCCTGAGTTTTCCCTCGATGTAAGCAATTCTGAGGGAATGAATGCCTCAAAAGGTTTTGCTTCTGATGACCTGGTGTATAACAGGAATAATGGAATCAATCAAGCAAAAGGACTATATTCTGTGAAAGAAAAGTTTGCTACATTGTGTGAAAGGAACAGGGTTTCCTCGTGCAGTACAAATGGTAACATATGCACACCAAGTTCAAAGACATTGCAAAGAGACACTGAAAAGGAAACAAGTCAAGAAGATGGGTTGTCAGATCAGAGACTATTTTCATGTGTCACCTGTGGAATATTAAGCTTTGCCTGTGTTGCTATTGTACAGCCTAGAGAACAAGCAGCTAGATACCTTATGACTGCTGACTGTAGCTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAACAATAAATTTACTGTTGCCCATGAAGATGCAGCTGTTCCCAAGCCAAGCACATATACAGGATGGACAAAACAGGATGCCCGAAATGATATTTGTGAAGTTCCTGTTCAATCTGCTGAACACCAGACCCTGTTTGCTGATAAAAATCATAAGGAGGCTTTAAATGCAGAAAGAAAAAGTGGCAATACAGCTCTTGCATTATTGGCTTCAGCTTACGGAAATTCATCTGACTCTGAGGAAGATCAGGGTGACTCAGATATTGAAGTTGATGGTGATGAATCAAATGTGACAAACTGTCCATCAACAAGTAGATCTCTGGAGACGTCTTGCTCACCTTCTCATTTTCAGGATTGCCATGCTAGTCCCATGGTTAGACTTGATAGAGGAGATGATATTACCTTGAAGGGCATTAACAATTATGAGTACTATATGCATAAGAGAGTTGAGCGCATCATGAGTCCTTTTGACCACTCCGTTAAGTCAGAAGATTATGACATCAATTCAGGAGATGTATTTAAAAATACAAGGGCGATGCCTCATTCCACCTTGAATTGTTCGAAAGATGCTCATGATATTGAAACATCATTGTTAGGCAACACTGTGACTCCCATCGACAATAAAAATGTTTGCCTGGTGCCTCCATCTGATGAAGACTCATCTAGATTGCATGTCTTTTGTCTTGAACATGCAGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCAAACATATCACTCCTATGTCATCCAGATTACCCCAAGATAGAGGCTGAAGCAAAATGTGTGGCAGAAGAAATGGGGATTGATTACATGTGGAAGAATACTGTATATAGGCATGCCAACAAGGAAGATGAGGAGAGGATCCAGTCAGCACTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATGCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGTAAGCTTGCCTGCAGAACCGAAGGTCTATCGGAGAAGGGCCAACAAGCAGAAAAAGGTGGTCGCTGGTAAATGGTGTGGTAAAGTCTGGATGTCCAATCAAGTCCATCCCTTCTTAGCTAAAACAGATTCTGAAGATGTTGAGGATGAGAGAGACTTGCATGGGTGGCCCTTCCCTGATGAGAAAATTGAGAGATCAGAAAGTACTCACAAAAGCAATAATACCAATAGTAAATCTGGCAGGAAAAGGAAAATTACTGTAGAGAATGGAAGAGCCAAGAAAGGTAGGTTCACCAGGAGAGATTGGCTTTCAGATGATTCAGTTGAAGATAAATGCAATCAAGATCAAAGGAGAATTCTCGGAAGTAAGCGAATCAAGCACATTGATAGAGATGATGCAGCTTCAGACAGGGATTATTCTCCTCTCCAGCATCACAGAAAACCTATAAGTAAGCACACAAAATGTGTTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGATAATTCTCTTATGCAGCATAGGAGGAATCGTAATCCCGAGGAAGCTAAATTTATTGACAATGTTCTGGTTTCGGATGATACAATGGACTATGATTCTGATGGGCCACAGAGGGAAGGGCTTAGCAGCAAGGATGATGCAATTTCGGAGGATTCATTGGGAGTTGGTTCTCCACAGCTGCATAGAAAGACTCCTAAAAGCAAGTATGGCAAACACATTGCTGCTGAAGATGTAACTTCCGATGACCAAATGGAGGTTTATCTTCAGAAGCAGCAGAAGAGGATATCGAAAAACCAGCAACGAAAATACCTTGCTAAAACAGATATAGTGATATCTGATGACCAACTGGAGCACTACATGAAGAAGCAGCCACGGAGGAATCCAAAAAGCAGGAAAGACAAACACCTTGCCGGAGAGGATGTTATATCTGATGACCAACTGGAGGGCTGTTCTCGCAAGTATCAAAGAAGGATTCCAAAGAGCAGGCAAGTCAAATGCATCCCTGAGGAAGATGTAACATCTGATGACCAATTGGAGGATCATTTTCAGAAGAACCAAAGGAGGGTCCCTAGGCGCAGACAAAACAAATGCCTTGGTGGTGAAGTTATGGATGACTCAACTGAAAATAATTCTCAATTGCTGCATAGAATTCCTAAAAGGAAACAAGCTAAATGCACGGAAGAAGATGTAAACTCAGATGATCAAGTGGAGGATGATTCTCTTCTGCAGCATAGGAGAACTCTTCGAAGGAAGCAATGTAAATCGCAGACGCTTCAAGAAATTAAAGAAGCTAACAATCTCCGTGTGAGAAGCCAGAAGACATCCAAGCCTGTGAAACGAGGTGCTCAGGTGCTAACCAAGTCAAAGGCTCCTAAGCAAATGAAACAGCAGGCTCGTGTCTCGAAGAATCAATCTGGTCACTCCAGAGGCTTTGCTTTAAACGCTGAAGAAGACGAAAAAGGCGGACCGAGCACACGCCTTAGGAAGAGAGTTCCAAAGATTGAGGAGTCCGAAGGAAAACCAAAAGAAAAGGAAACCAAAAGGAAAAAGGCAAAGAATGCTACAGCTGCAAAGGTTTCAGCTGGGCATGCCAAAGTGAAGGAGGAGGAAGCAGAATACCAATGTGACATTGAGGGGTGTACCATGGGTTTCGGTTCTAAGCAGGAGCTGGCACTTCATAAGAAAAACATCTGTCCTGTGAAAGGATGCGGAAAGAAGTTCTTCTCACACAAATATCTGGTGCAGCATCGGCGAGTACACGAGGATGAGCGCCCCCTGAAGTGTCCTTGGAAAGGGTGCAAGATGACTTTCAAGTGGGCGTGGGCACGGACAGAACACATTCGAGTCCACACTGGTGCTCGTCCTTATGTATGTGCTGAGCCAGGTTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAGCAAAGAAGAGTCGTTAA 4773 0.4616 MAGGSSDPGGGGGGGVEVFQWLKSLPVAPEYSPTAAEFQDPISYIFKIEKEASAYGICKIIPPVPPPPKKSAVANLTRSRPSFTTRHQQIGFCPRRPQPVRRPVWQSRETYTLREFESKAKSFEKTYLKKHARRACASGGGSLTPLEVETLYWKATSDKPFTVEYANDMPGSAFVPLQEAVGEAVVTVGETAWNMRCVSRANGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEVNPLVTFAILGEKTTVMSPEVLTSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPRGISAEPRSSRLKDKKKGEGEAIIKELFVQDVLQNNDLLHVLGKGSAIVLLPRSSSDFSVCSKLRVGSQQLKMSPEFSLDVSNSEGMNASKGFASDDLVYNRNNGINQAKGLYSVKEKFATLCERNRVSSCSTNGNICTPSSKTLQRDTEKETSQEDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMTADCSFFNDWIVGSGVTNNKFTVAHEDAAVPKPSTYTGWTKQDARNDICEVPVQSAEHQTLFADKNHKEALNAERKSGNTALALLASAYGNSSDSEEDQGDSDIEVDGDESNVTNCPSTSRSLETSCSPSHFQDCHASPMVRLDRGDDITLKGINNYEYYMHKRVERIMSPFDHSVKSEDYDINSGDVFKNTRAMPHSTLNCSKDAHDIETSLLGNTVTPIDNKNVCLVPPSDEDSSRLHVFCLEHAAEAEQQLRPIGGANISLLCHPDYPKIEAEAKCVAEEMGIDYMWKNTVYRHANKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNAVIYYAFGRSSPVSLPAEPKVYRRRANKQKKVVAGKWCGKVWMSNQVHPFLAKTDSEDVEDERDLHGWPFPDEKIERSESTHKSNNTNSKSGRKRKITVENGRAKKGRFTRRDWLSDDSVEDKCNQDQRRILGSKRIKHIDRDDAASDRDYSPLQHHRKPISKHTKCVESDAVSDDSLDDNSLMQHRRNRNPEEAKFIDNVLVSDDTMDYDSDGPQREGLSSKDDAISEDSLGVGSPQLHRKTPKSKYGKHIAAEDVTSDDQMEVYLQKQQKRISKNQQRKYLAKTDIVISDDQLEHYMKKQPRRNPKSRKDKHLAGEDVISDDQLEGCSRKYQRRIPKSRQVKCIPEEDVTSDDQLEDHFQKNQRRVPRRRQNKCLGGEVMDDSTENNSQLLHRIPKRKQAKCTEEDVNSDDQVEDDSLLQHRRTLRRKQCKSQTLQEIKEANNLRVRSQKTSKPVKRGAQVLTKSKAPKQMKQQARVSKNQSGHSRGFALNAEEDEKGGPSTRLRKRVPKIEESEGKPKEKETKRKKAKNATAAKVSAGHAKVKEEEAEYQCDIEGCTMGFGSKQELALHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR* 1591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1531 1590 MobiDBLite consensus disorder prediction 976 1026 - -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1391 1412 - -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 976 1006 - -
Dod05g1531 1590 Pfam jmjN domain 29 62 IPR003349 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 683 703 - -
Dod05g1531 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1552 IPR013087 -
Dod05g1531 1590 Pfam JmjC domain, hydroxylase 220 338 IPR003347 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1284 1344 - -
Dod05g1531 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1558 1589 IPR013087 -
Dod05g1531 1590 SMART cupin_9 187 356 IPR003347 -
Dod05g1531 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1222 1242 - -
Dod05g1531 1590 Gene3D Classic Zinc Finger 1496 1526 - -
Dod05g1531 1590 Gene3D Classic Zinc Finger 1557 1589 - -
Dod05g1531 1590 Gene3D Classic Zinc Finger 1527 1556 - -
Dod05g1531 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1557 IPR013087 -
Dod05g1531 1590 SMART JmjN_1 27 68 IPR003349 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1066 1080 - -
Dod05g1531 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1414 1454 - -
Dod05g1531 1590 SMART c2h2final6 1475 1497 IPR013087 -
Dod05g1531 1590 SMART c2h2final6 1528 1552 IPR013087 -
Dod05g1531 1590 SMART c2h2final6 1558 1584 IPR013087 -
Dod05g1531 1590 SMART c2h2final6 1498 1522 IPR013087 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1364 1383 - -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1103 1118 - -
Dod05g1531 1590 Gene3D Cupin 21 360 - -
Dod05g1531 1590 SUPERFAMILY beta-beta-alpha zinc fingers 1514 1556 IPR036236 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1066 1173 - -
Dod05g1531 1590 ProSiteProfiles JmjC domain profile. 190 356 IPR003347 -
Dod05g1531 1590 SUPERFAMILY Clavaminate synthase-like 107 356 - -
Dod05g1531 1590 SUPERFAMILY beta-beta-alpha zinc fingers 1546 1580 IPR036236 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 663 703 - -
Dod05g1531 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1560 1584 IPR013087 -
Dod05g1531 1590 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 1581 - -
Dod05g1531 1590 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1133 1148 - -
Dod05g1531 1590 MobiDBLite consensus disorder prediction 1364 1465 - -
Dod05g1531 1590 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 16 1581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1531 Dod-Chr5 40213855 40222922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1531 812 913 C2H2 Transcription Factor Family AT5G04240 33.333 2.63e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod05g1531 JmjC 1.3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1531 - - gmx:100775813 2074.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1531 05 40213855 40222922 Dod02g0553 02 7226586 7234651 PCT
Dod09g0190 09 2659394 2668627 Dod05g1531 05 40213855 40222922 PCT