Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1530 ATGGAACCCTCTAAATCCGATTCAGCTTCAGTTCCCAATGGTTCCGACCTACTGATGGGTGCTGCGGCTTCTTCTCAGTCCCCCGCTTCCCATAACGATCCTCAGCCCTCAGATCTCGATCGAACGGCCCAGGATGCTGCACTCTGCGCGGAGCTTCAGAGCAAGGTCGATTTGAAGGGTGAGGGTGAAGAGGGTGCCCAAACTGCTCATAAAGATTCCAACTTTAACGAAGCTGGTGAGGAAGGTGTTAAGGGTCATGATGATGAAAGTGTTAATGAGGGTGATGATGTAGGTGTTAAGGGTGGTGATGGTGGTGTCAAGAGTGGTGGTGAGGATGGTGTTAAGGTTGGTGATGAAGGTGTAAAGGGTGATGATGGTGTAGGTGTTAATGGTGTCGATGATGTAGGTGCTAAGGTTGATGGTGAATATGCAAAGGGTGATGATGAAGGTGCAAAGGGTGATGATGAAGGTGCCAATGGTTATGATGAAGGTGTAAAGGGTGATGATGAAGGTGCCAATGGTTATGAAGAAGGTGTTAAGGATGGGGATGATTATGGAGATAGCAGGGTCTGGGAGGTCAACAGTTGGGATGAGAACGTGAATGAGGGTGTGAATGTTGATAATGGAATTGGTGGTAATTTTCATGGTGTTGTTGGTGGTGGTTTGGAAGATGATTATGATGATGCTGATGGATTGGAGAAGAGGGAAGAGAGAAGTGTTGGTGGTGGTGGGATCCACCAGTACCCTTGGAGGCCTGAAGCTCAGGATTGTACATTTTATATGAAGACTGGGACTTGCAAATTTGGACTCAATTGCAAGTTCAACCACCCCATTAGGAGGAAGAACCAGGCTGTTAAGGAGTTGGCAGGAGAAAGAGAAGAACCGGCAGAAAGACCAGGCCAGACAGAATGCAAGTATTATCTAAGGTCTGGGGGCTGTAAGTTCGGAAAAGATTGTAAATATAACCACACAAGAGTAAAAGATTCAACACCACCAATAGCAGAACTTAACTTTCTTGGCCTGCCTATTCGTCCGGGGAAGAGAGAGTGTCCCTATTACATGCGCAATGGATCTTGTAAGTTTGGAGCGAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGAGGTGATCCTCCTTCAGGGCATGGTAATGGAGGGTCTATTTCAGTACATGGTGTATCCCAACAGTCTGTATCAACATGGTCTTCTCCAAGAACAATAAATGACACATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGGGTTTCTCCCCAAGGTTCTGATTGGAATGGATATCAGGCACCAGTCTACCTTCCTGAGAGGAGTATGCATCCGCCTGCTACATATGTCATGAACAACCCAGCAATTGAAACAAATGCTTTTATGCACCAGCAGCAGCAGATGCAAGTTGATGAGTTTCCGGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTAAAAACTGGGGATTGCAAGTTTAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGGTAACAAAATTGCCTCCGTGCAACCTCAATGACAAGGGCCTACCCCTGAGACCTGACAAGAATGCCTGCTCCCATTACACCCGATACGGAATTTGCAAATTCGGACCAGCTTGCAAGTTTGACCATCCAAACTCATTGCCATCGCTCGATCATCAACCCTACACAGACTCAGCTAGTGGGATGGGTGGAAACGGGGGTGCAAGTGATCCAACAATTCAGCAATCTTTGTAA 1758 0.4647 MEPSKSDSASVPNGSDLLMGAAASSQSPASHNDPQPSDLDRTAQDAALCAELQSKVDLKGEGEEGAQTAHKDSNFNEAGEEGVKGHDDESVNEGDDVGVKGGDGGVKSGGEDGVKVGDEGVKGDDGVGVNGVDDVGAKVDGEYAKGDDEGAKGDDEGANGYDEGVKGDDEGANGYEEGVKDGDDYGDSRVWEVNSWDENVNEGVNVDNGIGGNFHGVVGGGLEDDYDDADGLEKREERSVGGGGIHQYPWRPEAQDCTFYMKTGTCKFGLNCKFNHPIRRKNQAVKELAGEREEPAERPGQTECKYYLRSGGCKFGKDCKYNHTRVKDSTPPIAELNFLGLPIRPGKRECPYYMRNGSCKFGANCKFNHPDPTTVGGGDPPSGHGNGGSISVHGVSQQSVSTWSSPRTINDTSPFVPMMLSPTQGVSPQGSDWNGYQAPVYLPERSMHPPATYVMNNPAIETNAFMHQQQQMQVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVTKLPPCNLNDKGLPLRPDKNACSHYTRYGICKFGPACKFDHPNSLPSLDHQPYTDSASGMGGNGGASDPTIQQSL* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1530 585 SUPERFAMILY CCCH zinc finger 346 371 IPR036855 GO:0046872
Dod05g1530 585 SUPERFAMILY CCCH zinc finger 249 279 IPR036855 GO:0046872
Dod05g1530 585 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Dod05g1530 585 Gene3D - 294 376 - -
Dod05g1530 585 Gene3D - 479 568 - -
Dod05g1530 585 ProSiteProfiles Zinc finger C3H1-type profile. 251 279 IPR000571 GO:0046872
Dod05g1530 585 PANTHER PROTEIN PHOSPHATASE RELATED 8 584 - -
Dod05g1530 585 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Dod05g1530 585 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Dod05g1530 585 SMART c3hfinal6 251 278 IPR000571 GO:0046872
Dod05g1530 585 SMART c3hfinal6 527 553 IPR000571 GO:0046872
Dod05g1530 585 SMART c3hfinal6 480 507 IPR000571 GO:0046872
Dod05g1530 585 MobiDBLite consensus disorder prediction 558 585 - -
Dod05g1530 585 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 482 507 IPR000571 GO:0046872
Dod05g1530 585 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 529 552 IPR000571 GO:0046872
Dod05g1530 585 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 370 IPR000571 GO:0046872
Dod05g1530 585 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 277 IPR000571 GO:0046872
Dod05g1530 585 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 323 IPR000571 GO:0046872
Dod05g1530 585 Gene3D - 228 289 - -
Dod05g1530 585 SUPERFAMILY CCCH zinc finger 528 553 IPR036855 GO:0046872
Dod05g1530 585 ProSiteProfiles Zinc finger C3H1-type profile. 480 508 IPR000571 GO:0046872
Dod05g1530 585 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 584 - -
Dod05g1530 585 MobiDBLite consensus disorder prediction 138 186 - -
Dod05g1530 585 MobiDBLite consensus disorder prediction 389 408 - -
Dod05g1530 585 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Dod05g1530 585 MobiDBLite consensus disorder prediction 1 186 - -
Dod05g1530 585 SUPERFAMILY CCCH zinc finger 304 333 IPR036855 GO:0046872
Dod05g1530 585 MobiDBLite consensus disorder prediction 56 96 - -
Dod05g1530 585 SUPERFAMILY CCCH zinc finger 485 510 IPR036855 GO:0046872
Dod05g1530 585 MobiDBLite consensus disorder prediction 1 39 - -
Dod05g1530 585 MobiDBLite consensus disorder prediction 372 408 - -
Dod05g1530 585 ProSiteProfiles Zinc finger C3H1-type profile. 526 554 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1530 Dod-Chr5 40203054 40207471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1530 248 560 C2H2 Transcription Factor Family AT3G02830 40.653 1.69e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g1530 zf-CCCH 3.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1530 - - gmx:100786894 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1530 05 40203054 40207471 Dod09g0189 09 2651248 2656415 PCT