Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1520 ATGTCCCCTTCCCTTTATAGTTCCTCCAAGGGAGAATTCGATGATGAGAGTCCCGTAATTGGCCTTGAGCTCCCTTCCATTACTTACGATCCCTATCCCCACTCACCCATTTTGGGAAGCAGTGCTTCAAATTGTTTCTTTCCCTTTGCAGATCATGAAACCAGCAGGGACTACAAGAGGCATAAGACAAACACAAACACAAGCATCCCCATTTACCATCATGGAAACTATAGCAACAAACACTCATGTATCAACCTAATCAACAATTGGTATAGCTACCTAAGCAGTAACAACAGCGTGAGCAATAGCCTGTCAAGGCCCCACATAAGAGCTCACATAAAGACTTTGTACCTTGCTGCTGAAGCTGCTGAAGGTGGTGGATCTTCCACCGAAGACATGATCAATTCTGAAGGTGGTGGATCTTCCACCGAAGATGATGGTTGTGCTGACGGAATGAGACTTGTTCATCTTCTAATTGCTTGTGCTGAAGCCGTGGCTTGTCGCGACAAGTCACACGCTTCAGTCTTACTATCAGAACTGAAATCCAATGCTTTGGTATTTGGATCCTCGTTCCAGCGTGTTGCCTCTTGTTTTGTGCAAGGCTTAGCTGATAGGCTTGCTTTGATTCAACCTGCTATTGGGCCTGTTGGGGCGATGCAACCCATGATGAACATAATGGATTCAGCATCGGAGAAAATGGAAGAAGCTTTTAGGTTGGTTTATGATATTTGCCCGCATATTCAATTTGGACACTTTGTAGCAAATGCGGCAATACTGGAAGCCTTTGAGGGTGAGAGTTTCGTCCATGTGGTTGACCTTGGCATGAGCCTTGGCCTCCCACGGGGTCACCAGTGGAGGGGACTGATCCAAAGCCTGGCAAGCCGTTCCGGTAACCCGGTTCGCCGCCTCCGGATCACCGGCGTCGGACTTTGCATCGGCAGGCTCCAGGTGATTGGTGATGAACTCTCGGTTTATGCAAGCAACGTGGGAATTAACTTGAAGTTCTCATTAGTTCACAAGAATTTGGAGAATCTGCGACCTGATGACATAGAAGTCCATGAAGAGGAAGCTCTTGTGGTAAATAGCATCCTTCAGTTGCATTGTGTGGTTAAGGAAAGCCGCGGTGCTTTGAACTCAGTACTTCGAATGATTCACGGGCTTTCCCCAAAAGTATTGGTGATGGTTGAGCAGGATTCAAGTCACAATGGACCCTTTTTCTTAGGGAGGTTTATGGAATCACTGCACTATTACTCTGCTATATTTGACTCCCTGGATGCTATGTTGCCTAAATATGACACTAAGAGAGCAAAGATAGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGGCCATTGAGGATGGAGAGGCATGAGAGGGTGGACCAGTGGCGAAGGAGGATGAGCAGGGCTGGGTTCCAGGCTGCCCCTATTAAGATGGTGGCTCAGGCTAAGCAGTGGCTTGTGAAGAACAAGATTTGTGAGGGTTTTACGGTTGTCGAAGAGAAAGGGTGCTTGGTGCTTGGCTGGAAATCAAAGCCAATTGTTGCAGCTTCATGCTGGAAGTGCTAA 1584 0.4722 MSPSLYSSSKGEFDDESPVIGLELPSITYDPYPHSPILGSSASNCFFPFADHETSRDYKRHKTNTNTSIPIYHHGNYSNKHSCINLINNWYSYLSSNNSVSNSLSRPHIRAHIKTLYLAAEAAEGGGSSTEDMINSEGGGSSTEDDGCADGMRLVHLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLADRLALIQPAIGPVGAMQPMMNIMDSASEKMEEAFRLVYDICPHIQFGHFVANAAILEAFEGESFVHVVDLGMSLGLPRGHQWRGLIQSLASRSGNPVRRLRITGVGLCIGRLQVIGDELSVYASNVGINLKFSLVHKNLENLRPDDIEVHEEEALVVNSILQLHCVVKESRGALNSVLRMIHGLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLVKNKICEGFTVVEEKGCLVLGWKSKPIVAASCWKC* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1520 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 526 IPR005202 -
Dod05g1520 527 PANTHER DELLA PROTEIN RGL1-LIKE 77 526 - -
Dod05g1520 527 ProSiteProfiles GRAS family profile. 145 526 IPR005202 -
Dod05g1520 527 Pfam GRAS domain family 154 526 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1520 Dod-Chr5 40128759 40130800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1520 146 526 GRAS Transcription Factor Family AT1G14920 37.692 1.76e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod05g1520 GRAS 1.9e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1520 - - gmx:100815959 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1520 05 40128759 40130800 Dod05g1520 05 40128759 40130800 ECH