LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1511	ATGGCGGCAGGGCGAAAAGGTGTTCTGAGGAGAAGAGAATCTTACGAATACAGTTCCGTCAAGGAGCTTGATCACTGTAAGAATGGTTCTCTACAGAATAGGAATAGGGTTCATGATGGAAAAGAGGAGAGAGAGCAAGGTGAGGTGTATGTTCAACGTGAGGCTTATGCACGTGCCTCACGTGATGATGGGGATGAAGGCTTTCCACCACCAGAGAAGAGAAGTAAGTTTTCTCCAATTGTGTGGGACCTGCCAGAGAAGGAAGGAAGAGCCTGTTCCCAGAATAGGGTCATGCAGGTTGCTGATGTGTCCATGAATAAGGAAGAATCTAGTCCATCTCCGCAAATAATTCATGTAGATGATGGTGTTTTGCATGGGGATATTGCCAGGGTGCCTCCACCCTCGCCTTATGTTTTTGATTCAGGGGACAATAATCAAGAGGCAGATGAAGAGAACAATGGGCGAGGATGGAACATCAAAATGTCTAGATGGGCTTCCATGGGTGCTGATGATGAATTCAAGCATGGCAAAGCGTGCTCAAGTCCTGAAACTGGTGAATTCCTGAGAGAATGTTCAGAAAGCACAATCACTAGATCAACAGGAAGCAGTGGAAGAGATCATTATTTGGGCCGCTCTACTGATGATACCGATTCTGAAAAGGAGTTCCGTGGTGACTCCATGGATGATGGTGAGGAACAAAGTGATGTTAGTGATTCTCCATCAGATTCAGACGAAAGCTGGGATGTAATGCATGGGCACAGAAATATAAACATGCTTCAGAGTTGCAGAAGTGTGTGTGAGTTTGAAATGATTAAGAAAATAAATGAAGGGACTTATGGTGTTGTCTACAAGGCTAGGGATAAGAAGACTGGGGAAATAGTAGCATTAAAGAAGGTGAAGATGAACATAGAAAAGGATGGGTTTCCAATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTCAACCATCCTTCCATTGTTGATGTTAAAGAAGTCGTTGTGGATAATTATGATGGTACTTTTATGGTGATGGAGCACATGGAACATGACCTCAAGGGGCTCATGGAGGCAAAGAAGCAGCCCTTCAGTATAGGTGAAATAAAATCCTTGATGCTGCAACTTCTTGAAGGTGTTAAGTATCTCCATGATAATTGGGTTCTCCATAGGGACTTGAAGACATCAAACATTCTGCTGAACAATGAAGGGGAGCTGAAAATATGTGACTTTGGGTTGTCACGGCAGTTTGGAAGCCCACTGAAGCCATATACTCCTATTGTGGTCACACTATGGTACAGGGCACCTGAACTTTTGTTAGGCGCTAAAGAATATTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCCGAATTAGTTGCTAAGGAGCCTCTGTTCAAGGGTAAAACAGAACTTGAACAACTTGATAAGATCTTTAGGACCCTGGGTACACCCAATGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGTTCTAAAGCAAACTTTGTTAAGCAACCGTATAATATGCTAAGGAAGAAATTTCCAGCTGCATGTTTCACAGGTTCAACAGTTCTATCTGAGCTGGGATTTGACTTGTTGAAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCCACGAAGCCCCCCGTCCAAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGCGTGGCTAG	1734	0.4331	MAAGRKGVLRRRESYEYSSVKELDHCKNGSLQNRNRVHDGKEEREQGEVYVQREAYARASRDDGDEGFPPPEKRSKFSPIVWDLPEKEGRACSQNRVMQVADVSMNKEESSPSPQIIHVDDGVLHGDIARVPPPSPYVFDSGDNNQEADEENNGRGWNIKMSRWASMGADDEFKHGKACSSPETGEFLRECSESTITRSTGSSGRDHYLGRSTDDTDSEKEFRGDSMDDGEEQSDVSDSPSDSDESWDVMHGHRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIEKDGFPMSSLREINILLSFNHPSIVDVKEVVVDNYDGTFMVMEHMEHDLKGLMEAKKQPFSIGEIKSLMLQLLEGVKYLHDNWVLHRDLKTSNILLNNEGELKICDFGLSRQFGSPLKPYTPIVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELVAKEPLFKGKTELEQLDKIFRTLGTPNEKIWPGLSKLPGSKANFVKQPYNMLRKKFPAACFTGSTVLSELGFDLLKKLLTYDPEKRITAEDALLHDWFHEAPRPKSDFKPIFPSWRG*	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	26	80	-	-
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	208	230	-	-
	Dod05g1511	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	387	399	IPR008271	GO:0004672\|GO:0006468
	Dod05g1511	577	SUPERFAMILY	Protein kinase-like (PK-like)	262	563	IPR011009	-
	Dod05g1511	577	Gene3D	Transferase(Phosphotransferase) domain 1	350	570	-	-
	Dod05g1511	577	Gene3D	Phosphorylase Kinase; domain 1	251	349	-	-
	Dod05g1511	577	ProSiteProfiles	Protein kinase domain profile.	268	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	135	157	-	-
	Dod05g1511	577	SMART	serkin_6	268	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g1511	577	PANTHER	CYCLIN-DEPENDENT KINASE	188	576	-	-
	Dod05g1511	577	PANTHER	CELL DIVISION PROTEIN KINASE	188	576	-	-
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	191	207	-	-
	Dod05g1511	577	Pfam	Protein kinase domain	268	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	26	72	-	-
	Dod05g1511	577	CDD	STKc_CDC2L1	262	558	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Dod05g1511	577	MobiDBLite	consensus disorder prediction	191	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1511	Dod-Chr5	40023786	40026975	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1511	263	564	Core Cell Cycle Gene Families	AT5G10270	45.597	3.59e-85	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Dod05g1511		Pkinase	9.3e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1511	K08818		-	gmx:100788840	775.393