Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1508 ATGGCTACGTGTCCTACTTCCCTTTCCTTGTGCCCTCACTCCCTCTGTCACCGCCCTCGCCCCACATGGCCTTCCATTTCTTGCTCTTTTCCCTCTTCTCCCCTCCCAGATAATGGTGGATCTAAAGTACCACGCAAACGATCAAGAAGAATAGAAGGTCCAAGAAAAAGCATGGAAGACTCAGTTAAGCGTAAGATGGAGCAATTTTACGAAGGATCCGATGGACCACCCCTCCGAGTTCTTCCTATTGGCGGATTAGGTGAAATTGGAATGAATTGCATGCTTGTTGGTAACCATGACCGCTATATCCTCATAGATGCTGGTGTCATGTTTCCAGACCATGATGAGCTTGGGGTCCAAAAGATCATACCTGATACGACATTTATTAAAAAATGGAGCCACAAAATTGAAGCAGTCGTTATAACACATGGGCATGAAGATCATATTGGTGCGTTACCTTGGGTCATCCCAGCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTCACAATGGAGCTTATCAGGAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGGTAGAGCCTATCACGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGTTGTTCAGATGGGACCATTTTTCACACTGGGGACTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTGACATTGATGATGAGTGATTCGACAAACGTGCTTTCACCCGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATTGCAACTCAGTTCGCATCAAATATCCATCGACTAGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTAAGGACATATTTAGATGCTGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTAAAAGCAGAGGATATTGATGCTTATGCTCCGAAAGATCTGCTAATTGTAACAACCGGTTCTCAAGCAGAACCACATGCTGCCTTGAATCTTGCATCTTACGGGAGTAGTCATTCTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCGGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTCATGGAGATGCTAAACCGCATTTCAGAAACTGGATCAACAATAGTTATGGGGAAGAATGAATGCCTGCACACATCTGGTCATGGGTATCGTGGAGAACTGGAGGAAGTTCTTAGAATTGTGAAGCCACAACATTTTCTTCCTATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATCCGGCACACCACCGTTATTAAGAATGGAGAGATGCTTGGTGTTTCGCATTTGAGAAATAGAAGAATCCTTTCTAATGGTTTCATTTCATTTGGAAAGGAAAATTTGCAGTTGAAGTATAGCGATGGTGACAAAGCATTTGGTACATCAAGTGAACTCGTCATTGATGAAAGAATGAGAATCGCATTAGATGGCATCATTGTGGTTAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGCTGAGGAAAATGGTGAGGAAGTACAGTGGTAAACGTCCTGAAGTTATTACCATTGCTGTAGAAAATCCTGCAGCTGTTCTTGCTAAAGAAGTAAACTCAAGGTTGTCTGGCAAATCCCATGTTGGTGGGACATCCACGTCGAGAAGTGCGTTCAATGGACATGGGAAGGAAAATCAGTCCACCAAAGTGCGAATAAGAGTCCTCTTGCTGAGTTGA 1914 0.4316 MATCPTSLSLCPHSLCHRPRPTWPSISCSFPSSPLPDNGGSKVPRKRSRRIEGPRKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDHDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFVAGPFEVEPITVTHSIPDCCGLVLRCSDGTIFHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISAAKGRVIATQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPHAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISETGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRILSNGFISFGKENLQLKYSDGDKAFGTSSELVIDERMRIALDGIIVVSCPVNCPLAHMERIVSEVLRKMVRKYSGKRPEVITIAVENPAAVLAKEVNSRLSGKSHVGGTSTSRSAFNGHGKENQSTKVRIRVLLLS* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1508 637 MobiDBLite consensus disorder prediction 603 624 - -
Dod05g1508 637 PANTHER RIBONUCLEASE J 1 549 - -
Dod05g1508 637 PANTHER RIBONUCLEASE J 548 632 - -
Dod05g1508 637 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Dod05g1508 637 CDD RNaseJ_MBL-fold 81 492 - -
Dod05g1508 637 MobiDBLite consensus disorder prediction 28 62 - -
Dod05g1508 637 Pfam Beta-lactamase superfamily domain 101 237 IPR001279 -
Dod05g1508 637 MobiDBLite consensus disorder prediction 42 62 - -
Dod05g1508 637 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 476 IPR011108 -
Dod05g1508 637 SMART Lactamase_B_5a 90 287 IPR001279 -
Dod05g1508 637 Gene3D - 82 494 IPR036866 -
Dod05g1508 637 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 549 - -
Dod05g1508 637 Gene3D - 279 429 IPR042173 -
Dod05g1508 637 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 548 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1508 Dod-Chr5 39998521 40006528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1508 - - gmx:100814619 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1508 05 39998521 40006528 Dod05g1508 05 39998521 40006528 ECH
Dod05g1508 05 39998521 40006528 Dod09g0158 09 2210811 2218876 PCT