Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1501 ATGGCCTGGCATGAAAAGATTTGGCTCGTTTTGACAGCTTTAGTAAGAGCAATAGGGCTTGGAGTTGTCTTGAATTTGGAGAGCAAAGTGAGACAAGAGTGGTCAAATAGATTTGACTCCTCTACAATGAAGAGGAGAAGGCAAAAAACGAGAGAAGCCGCAGCAGCGGAAAAGAGCGAAATAGAGAGAGAAAGAGAGTGTGTGAGAGAGAGAAGCATGGTTTCAACGAGACGCAGTGGATCTCTCTCTGCGAGTAACACCAAAAGATCTTCCTCTTCAGAGGACAACACCAAGCCTTCTTCACCGAAACCTTCACCCAAGCGCCAAAAGGTCGACAATGGCGGTTCGCCGGAGAAACCGATGCCTGTGGCGGAGGATTCAAAGGAATTGTATACTCCGGCGGAGCCTGCGCCCGATCCCGGAGAATGTGGCTCCGCCGCCGCGCAGATCGCTGGAGCTGCTGGCGGTGGTGCTGCTGCTGAAGGTGTGAGCTCAGCCAAGGGCGATGCTGTGCCGTCGTCTGTGGCTGTCGCTGTAGCTCCGCCGATTGCCGACGCAACATGTCCTCCGTTCTCTTCGTGGAGTATATATCCGAAGCAAAATCCGAACATTGAGGCTTCGGGGGCTCCTTGGTGCAAGCTCTTGTCTCAGTCTGCACAGAATCCGAATGTTGTTGTTTGCCCAACCACTTTCACGATTGGCTCTAGCAGGAGTTGCCACTTTGCAATGAAGGATCAGACTATAAGCGCGAATTTATGCAAGATCAAGCATACCCAGGGCGAGGGAGGTGCTGTTGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCCGTGCTAGTGAATGGGACCCTTGTCAAAAAGAATACCACCTGTGTCCTTAACTCGGGTGATGAGCTGGTTTTTGGATTGCTGGGAAATCATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAGTTAGGGGAGCAGAAGTTCAGACTGGTGTTGGGAAATTTGTGAAGCTTGAAAGAAGAACTGGAGATCCTTCAGCTGTAGCTGGGGCTTCTATTTTGGCTTCTCTTTCTAATCTCAGACAGGACCTTACAAGATTGAAATCTCCATCTCAGAGTTCGATAAAACCTCACCAGGGCACTGATGCCTCTACTCATTCTGTTCTTAATGATGGTACAGAGATTGAGGTTGATGATGGCTTGGAATCAGCTCCAAATATGCAGAGTGGTAAAGCAGCAGATGCTGGAACTAGCGACAAGAATTCACCAATGGATTGCGGTCCAGATGCTGGCGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTTAATGATTTCCTAAGGCCTTGCTTCAGGATCTTAGCTCAAACTAGTTGTAAGCTGAAATTGAGCAAAAGTATCTGTAAACAGGTGTTGGAAGAAAGAAATGGGACGCCGGATATGCTGGCTGCATCAATATCGGGTACATCTGTGCGCAGTACAGTATTCAAAGAAGATGTTCATGCTGCAATACTGGATGGAAAGGAAATAGATGTGTCTTTTGACAACTTCCCATACTATTTAAGTGAGAGTACAAAAAATGTCCTGGTGGCAGCTTGCTATATACATCTCAGGCATAAAGAACATGAAAAGTACACTGCAGATCTTACAACCATTAACCCTCGTATTCTGCTGTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCCAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCCTCCAAAGAAGCTGAGCTACTCAAAGATGGATTTAATGCTGAAAAATCCTGCAGCAGCGCTAAACAAAGTCCTACAGCCACAGACTTGGCTGGGAGCACGGACCCATTAGCTAGTGAAACAGATACACCTTCATCTTCCAGTGCCCCTATATCCTGTGGCCTTGAGTCTCAACCTAAGTTGGAAACTGATAACTTACCATCTACCTCCGGTGCAGTTAAAAGCTGCTTGTTTAAATTAGGTGATAGGGTGAAGTTTAGCTATTCGTCTTCTTGTGGTTTGTATCCGACATCTTCAAGGGGCCCACTTAATGCAAGCCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAGCCAATACCTGATGGTGTTGATCTTGGAGGTGCCTGCGAACCAGGCCAAGGATATTTCTGCAATGTCACTGACCTGCGATCGGAAAACACTGGTGTGGAAGAACTGGACAAACCACTTATTAATTCACTGTTTGAGGTTGTTTTTAGTGAGAGCAGAAGTTCACCTTTAATTTTGTTCATGAAAGATGCCGAGAAGTCTATAGTCGGAAATGGAGACCCATATTCATTTAAAAGTAAGCTTGAAAAGCTTCCAGACAATGTGGTGGTAATAGGTTCTCACACCCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAATTTGGAAGCAATCAAACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGACGATTGCATGATAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTGGCTAAGCTTTTCCCAAATAAGATTGTGATTCACTTGCCACAGGATGAGGCTCTTCTTGCATCTTGGAAGCAGCAACTGGAACGAGATGCTGAGACTCTTAAAATCAAAGGAAATTTACATCATTTGCGCTCAGTTTTGGGGCGTTGTGGAATGGAATGCCAAGGACTTGAGACTTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGTGGATAAGATAGTTGGTTGGGCTTTAAGCCATCATCTCATGCAGAATCCTGGAGCTGTTCCTGATTCAAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTAGAATCTTGCAGTCTATCCAGAATGAGTCCAAGAGCCTCAAGAAGTCTCTTAAGGATGTTGTAACAGAGAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCTCCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTGACAAAGCCTTGCAAGGGTATCCTGCTGTTTGGACCCCCTGGAACGGGTAAAACAATGCTTGCCAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGCATTACATCTAAGTGGTTTGGTGAGGGCGAGAAATATGTGAAAGCTGTATTCTCTCTGGCGAGTAAAATTGCTCCTAGTGTCATATTTGTTGATGAAGTTGACAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATTCATGGTGAATTGGGACGGTTTAAGGACCAAGGAGACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATAAGGAGACTGCCGCGCAGATTGATGGTAAATTTGCCCGATGCTCCTAACAGAGCAAAAATATTAAAAGTCATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATCTGGATGCACTTGCAAATATGACCGACGGATATTCTGGGAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAGGAAATATTAGAAAAGGAAAGAAAGGACCTTGCTACTGCTGTAGCAGAAGGTGGACCTGCTCCACCATTATGTGGTAGTGGGGACATCCGATCTTTAAAAATGGAAGACTTCAAATATGCACACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCATAAATATGACGGAGCTTCAACAGTGGAATGATCTCTATGGCGAAGGTGGCTCTCGAGTGAAGAAATCACTCAGCTATTTTATGTAG 3954 0.4492 MAWHEKIWLVLTALVRAIGLGVVLNLESKVRQEWSNRFDSSTMKRRRQKTREAAAAEKSEIERERECVRERSMVSTRRSGSLSASNTKRSSSSEDNTKPSSPKPSPKRQKVDNGGSPEKPMPVAEDSKELYTPAEPAPDPGECGSAAAQIAGAAGGGAAAEGVSSAKGDAVPSSVAVAVAPPIADATCPPFSSWSIYPKQNPNIEASGAPWCKLLSQSAQNPNVVVCPTTFTIGSSRSCHFAMKDQTISANLCKIKHTQGEGGAVAVLESTGSKGSVLVNGTLVKKNTTCVLNSGDELVFGLLGNHSYIFQQLNTEVAVRGAEVQTGVGKFVKLERRTGDPSAVAGASILASLSNLRQDLTRLKSPSQSSIKPHQGTDASTHSVLNDGTEIEVDDGLESAPNMQSGKAADAGTSDKNSPMDCGPDAGAEAGNVKLSGVNDFLRPCFRILAQTSCKLKLSKSICKQVLEERNGTPDMLAASISGTSVRSTVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACYIHLRHKEHEKYTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSCSSAKQSPTATDLAGSTDPLASETDTPSSSSAPISCGLESQPKLETDNLPSTSGAVKSCLFKLGDRVKFSYSSSCGLYPTSSRGPLNASRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEPGQGYFCNVTDLRSENTGVEELDKPLINSLFEVVFSESRSSPLILFMKDAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLAKLFPNKIVIHLPQDEALLASWKQQLERDAETLKIKGNLHHLRSVLGRCGMECQGLETLCIKDQTLTNENVDKIVGWALSHHLMQNPGAVPDSKLVLSCESIQYGIRILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDALANMTDGYSGSDLKNLCVTAAHRPIKEILEKERKDLATAVAEGGPAPPLCGSGDIRSLKMEDFKYAHQQVCASVSSESINMTELQQWNDLYGEGGSRVKKSLSYFM* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1501 1317 CDD FHA 211 311 IPR000253 GO:0005515
Dod05g1501 1317 ProSitePatterns AAA-protein family signature. 1156 1175 IPR003960 GO:0005524|GO:0016887
Dod05g1501 1317 Gene3D - 1011 1292 IPR027417 -
Dod05g1501 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1253 IPR027417 -
Dod05g1501 1317 SMART AAA_5 1049 1186 IPR003593 -
Dod05g1501 1317 Pfam AAA+ lid domain 1206 1241 IPR041569 -
Dod05g1501 1317 Gene3D - 210 319 - -
Dod05g1501 1317 SUPERFAMILY SMAD/FHA domain 210 304 IPR008984 GO:0005515
Dod05g1501 1317 MobiDBLite consensus disorder prediction 38 73 - -
Dod05g1501 1317 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 159 1317 - -
Dod05g1501 1317 CDD AAA 1051 1184 - -
Dod05g1501 1317 MobiDBLite consensus disorder prediction 362 425 - -
Dod05g1501 1317 MobiDBLite consensus disorder prediction 607 644 - -
Dod05g1501 1317 MobiDBLite consensus disorder prediction 362 387 - -
Dod05g1501 1317 Coils Coil 51 71 - -
Dod05g1501 1317 MobiDBLite consensus disorder prediction 38 145 - -
Dod05g1501 1317 MobiDBLite consensus disorder prediction 74 107 - -
Dod05g1501 1317 Pfam FHA domain 232 301 IPR000253 GO:0005515
Dod05g1501 1317 Coils Coil 973 993 - -
Dod05g1501 1317 Pfam ATPase family associated with various cellular activities (AAA) 1053 1182 IPR003959 GO:0005524|GO:0016887
Dod05g1501 1317 Gene3D - 1185 1279 - -
Dod05g1501 1317 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 159 1317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1501 Dod-Chr5 39921514 39939968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1501 1012 1256 Calmodulin-binding Proteins AT3G56690 40.079 3.15e-41 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1501 05 39921514 39939968 Dod09g0151 09 2173353 2182458 PCT