Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1486 ATGGCTACAGCGACACCTTCATCGAACCGTTCCGCGGAGGACGTCTTGGATCAGACGCCGCTCATCGCGAATTCCGGCAACTCCTCCGACGAATCCAATTCCGGCCGGCGATTCGTCCGGCGACAGAGCCTCCGTCAGGCGGCGCGGTTTCTCCGGCAGGCGAGCGGGCGGAGGACGACGATGCGGGAGCCGTCGATGGTGGTGAGGGAGACGGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCGTACTCGAAGCCAGTGGTAGTTCTTGACATCCTGTGGAACTTGGCGTTCGTGGTGGCCGGCGCCGCCGTGATGGTGCTGAGCAGGAACGAGTCTCCGAGCACGCCACTGAGATTGTGGATCGTAGGGTACGGTCTTCAGTGCGTTGTGCACGTGGCGTGCGTGTGCGTGGAGTTTCGGAGGAGGAGGTGGAGGAGGAGGAGGATGGAGCAGATGAGCGAAAACGACGCCGTTCAGGACGGCGATGATGCGGTTGCGATTGGGATTGGGGTTGGGGGAAGTGGGGATTTGAGCTCTGGTTCTGTCGATGGTTCTGGACAGTATGTGGCATTGGCGCAATTCGAAGAGGACGGTGGAACAAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCATTTATTTGGTGGGTTGTTGGATTCTATTGGGTATCAGCTAGTGGTCCAGCTTTGGCACAGGAGTCTCCTCTGCTTTACTGGTTATGTATAGTCTTCTTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTACGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGACAAAGTTCAAATTCCGAAGAACTGAAAATAATGAGAAAGCTGGTGATACACAAGGACCTTCTAGAGGAATAATGACAGAATGCCAGGCTGATTCACCTATTGAACAATTCCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGATGGGGTTGAACTAAGACAACTTCCCTGTGGTCACCACTTTCACTGTGCCTGTGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTACCAGCCATGGTCCAGAGGAAGTATAG 1200 0.5233 MATATPSSNRSAEDVLDQTPLIANSGNSSDESNSGRRFVRRQSLRQAARFLRQASGRRTTMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNLAFVVAGAAVMVLSRNESPSTPLRLWIVGYGLQCVVHVACVCVEFRRRRWRRRRMEQMSENDAVQDGDDAVAIGIGVGGSGDLSSGSVDGSGQYVALAQFEEDGGTSMAKHLESANTMFSFIWWVVGFYWVSASGPALAQESPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLTKFKFRRTENNEKAGDTQGPSRGIMTECQADSPIEQFLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSTSHGPEEV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1486 399 CDD RING-H2_RNF111_like 343 387 - -
Dod05g1486 399 SUPERFAMILY RING/U-box 334 392 - -
Dod05g1486 399 MobiDBLite consensus disorder prediction 1 38 - -
Dod05g1486 399 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Dod05g1486 399 MobiDBLite consensus disorder prediction 1 33 - -
Dod05g1486 399 PANTHER TARGET OF ERK KINASE MPK-1 4 399 - -
Dod05g1486 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 397 IPR013083 -
Dod05g1486 399 Pfam Ring finger domain 343 385 IPR001841 -
Dod05g1486 399 SMART ring_2 344 384 IPR001841 -
Dod05g1486 399 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1486 Dod-Chr5 39713514 39719367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1486 25 394 C3H Transcription Factor Family AT1G68070 46.649 1.21e-114 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1486 - - ahf:112722254 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1486 05 39713514 39719367 Dod02g1069 02 13349326 13355373 PCT