Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1476 ATGGCCTCATCGTCTTCAATTTCATCATCTTCTTCTTCAAAGAGGCACCCATTGTATCACGGCATTCGCTGCCGTGGAGGAAAATGGGTGTCCGAGATCCGGGAGCCTCGCAAGACTACCCGGATATGGCTCGGCACATTCCTGACGCCAGAGATGGCCGCTGCTGCCTATGACGTGGCGGCGATGGCCCTCAAAGGTGGGGAAGCCTCCCTCAACTTCCCTGCCATGGCAGGGAAGTACCCGGTGCCCCCCTCCAACTCACCAGCTGACATTCGCAGCGCTGCCACCGCCGCAGCACGACTCATGAATGCTGAATTCCACAATGCATCATCAACCAATGATGCAGTTCAGCCTCACCATAACGAAAGCATTGATGCTGCCACTGACATTGCTTCTTTTCCTGAAACTGAGTTCTTGGATGAGGAAGCCATTTTCTCCATGCCGAGTTTGCTGGTTGACATGGCTGAGGGAATGCTTCTGTCACCGCCCAGAATGAGCCCGCCATCGCCGTACGACTCGCCGGAAAATTCTTCTGGAGGAGAAAGTTTGTGGAACTATTAA 561 0.5401 MASSSSISSSSSSKRHPLYHGIRCRGGKWVSEIREPRKTTRIWLGTFLTPEMAAAAYDVAAMALKGGEASLNFPAMAGKYPVPPSNSPADIRSAATAAARLMNAEFHNASSTNDAVQPHHNESIDAATDIASFPETEFLDEEAIFSMPSLLVDMAEGMLLSPPRMSPPSPYDSPENSSGGESLWNY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1476 186 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Dod05g1476 186 MobiDBLite consensus disorder prediction 161 186 - -
Dod05g1476 186 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Dod05g1476 186 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Dod05g1476 186 Pfam AP2 domain 19 66 IPR001471 GO:0003700|GO:0006355
Dod05g1476 186 PANTHER ETHYLENE RESPONSE FACTOR 8 186 - -
Dod05g1476 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 186 - -
Dod05g1476 186 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Dod05g1476 186 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Dod05g1476 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1476 Dod-Chr5 39528765 39530352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1476 8 186 AP2-EREBP Transcription Factor Family AT5G52020 53.039 8.63e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod05g1476 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1476 - - adu:107489031 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1476 05 39528765 39530352 Dod02g1058 02 13223970 13225081 PCT