Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1473 ATGGATATCCTCGGACAACCATTTGACGATTACCGTTCATGTTCATCGTATTCGTCGGAAACTGCTAGCTCCTCTAATAACCCTTCAAACACTTACGAGGAAGTGATTTTGGCGTCCTCGAAGCCGAAGAAGCGTGCGGGGCGAAGAATATTCAAGGAGACGAGGCACCCAGTGTATCGAGGGGTGCGAAAGAGGAACAACAACAAGTGGGTCTGCGAGGTACGCGTTCCAAACAGCAAGTCCAGAAGGATATGGCTGGGAACCTACGCCACACCCGAGATGGCGGCGCGTGCGCATGACGTCGCCGCCCTAGCCCTTCGGGGGAAGGCGGCGTGCCTAAACTTTGCCGACTCGTCTGCAGACGCTGTGGAGATAAGGAGGGCGGCCGCCGAGGCTGCCGAGATGGATGCGGTTGAGGACGGTTATAACCGTCCGCAAATTTTGGACAATGCCGTTATTGATTATGAAGTTTGCAGCAGTGAAACCGTTGGGGTCGTGGAAGATGCAAAGAAGCCGTTGATAGGGTTGTGCCTAGGTGAAATTCGTGGTGTGTCGGAATTTGAGGACGTTCATGATTGGCTTCGGAGAATGGCGGAAGAGCCTTTACGATCTCCGCCTCCTTTTGTGAGATATGGTAATTATCGGGAGTGGAACGATGTGGAGGCTGATGCTGAGGTGTCCCTGTGGAGCTTTACCATTTAA 702 0.5299 MDILGQPFDDYRSCSSYSSETASSSNNPSNTYEEVILASSKPKKRAGRRIFKETRHPVYRGVRKRNNNKWVCEVRVPNSKSRRIWLGTYATPEMAARAHDVAALALRGKAACLNFADSSADAVEIRRAAAEAAEMDAVEDGYNRPQILDNAVIDYEVCSSETVGVVEDAKKPLIGLCLGEIRGVSEFEDVHDWLRRMAEEPLRSPPPFVRYGNYREWNDVEADAEVSLWSFTI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1473 233 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
Dod05g1473 233 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
Dod05g1473 233 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Dod05g1473 233 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Dod05g1473 233 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Dod05g1473 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 233 - -
Dod05g1473 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 233 IPR045277 GO:0003700
Dod05g1473 233 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Dod05g1473 233 CDD AP2 59 118 IPR001471 GO:0003700|GO:0006355
Dod05g1473 233 Pfam AP2 domain 57 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1473 Dod-Chr5 39491242 39491968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1473 33 206 AP2-EREBP Transcription Factor Family AT1G12610 50.802 2.01e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod05g1473 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1473 - - gmx:100795696 220.705