Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1464 ATGGTGAGGGGGAAGACTCAGATGAAGCGCATCGAAAACGACACGAGCAGGCAAGTAACCTTCTCAAAGAGAAGAAACGGGCTTCTCAAGAAGGCCTTTGAGCTCTCAGTGCTGTGTGATGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAAGCTCTATGAGTTCTCCAGCACTAGTATAAACAGGATAGTCGAACGCTATCAAAGGAAGGTCAAGGATGCGGGTCTCAACACGAAAGGAAACCAAGAAAATGCCCAGTATCAGAAGTCTATTGAAACTCAATCAATCTGGCTCAAGCTAGGTTCACCCACGATGGAGCATGTAAAGGGAGGTGATACCAACATGGCAAAGAAGATAGAGCACCTAGAAGCTTCTAAAAGGAAGCTTTTGGGAGATGGTTTGGATACATGCTCAATTGACGAGCTACAACAGTTAGAGGATCAGCTAGAACGAAGCTTGAACAAGGTTAGGGCAAGAAAGGATCAATTGTTCAAGGAGCAAATTGAGAAGCTACAGGAAGAGGAAAAACGCCTACTTGAAGAAAACAGACTTCTGCGGAAGCAGCTTCAACAACAACAATCATTTAGCAAACCAGATGTGGTGCTGCTCATCAACGAAAGGAAGGGTGAGGACGAAGAAGAGGAAGAGGAAGAGGTGGATGTGGAGACACAGTTGTTCATTGGACGTCCTGAGAGGCGAAAGCCTTGA 714 0.4608 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSTSINRIVERYQRKVKDAGLNTKGNQENAQYQKSIETQSIWLKLGSPTMEHVKGGDTNMAKKIEHLEASKRKLLGDGLDTCSIDELQQLEDQLERSLNKVRARKDQLFKEQIEKLQEEEKRLLEENRLLRKQLQQQQSFSKPDVVLLINERKGEDEEEEEEEVDVETQLFIGRPERRKP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1464 237 PANTHER MADS BOX PROTEIN 1 233 - -
Dod05g1464 237 Pfam K-box region 115 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g1464 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Dod05g1464 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Dod05g1464 237 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g1464 237 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Dod05g1464 237 Coils Coil 141 194 - -
Dod05g1464 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 MobiDBLite consensus disorder prediction 208 237 - -
Dod05g1464 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod05g1464 237 PANTHER MADS-BOX PROTEIN SOC1 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1464 Dod-Chr5 39286284 39305765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1464 1 236 MADS-box Gene Family AT4G22950 52.966 2.17e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod05g1464 K-box 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1464 - - gmx:100782713 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1464 05 39286284 39305765 Dod05g1464 05 39286284 39305765 ECH