Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1461 ATGGCTGCAGAAATTCATCAATCTTGTAGCTTCAATAGCTTCTTGTTGGTTACATTTACATGGGTGTTCACGACCATTGGAAATTCAGCAGTAGCAGCTGGCATATTTCAACCCAGTCAATGGGCCCCTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGGTACGGAAATCTGTTCATAAACGGTTACGGGACAGATACAGCTGCTTTGAGCTCAACATTGTTCAACAACGGGTATGCATGCGGGGCTTGTTATCAGATACAATGCTACAATTCGAGTGCATGCTACTACAATGTGCCTTACACCATTGTGACTGCCACAAATCTTTGCCCTCCGAATTGGGCCAAGGCCTCTGATAATGGTGGTTGGTGCAACCCACCACGGGCCCATTTCGACATGTCCAAGCCCGCCTTCATGAAAATTGCCGACTGGAACGCTGGCATTGTCCCTGTTATGTACCGCAGAGCACCATGCGTAAGGAGTGGAGGGCTTCGATTCTCTTTCCAAGGGAATGGATACTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCAAACATGTGGGTCAAAGGAAGCGGAACAGGGTGGATTAGCATGAGCCACAACTGGGGTGCTTCTTATCAGGCATTTGCAACACTCAGTGGCCAAGCTCTTTCTTTCAAGATCATTTCCTACACAACCCAACAGACCATTATGGCATGGAATGTTGCTCCTTCCAATTGGGGCGTTGGCCTAACTTATTCCTCTAATGTCAACTTCCAATAA 804 0.4776 MAAEIHQSCSFNSFLLVTFTWVFTTIGNSAVAAGIFQPSQWAPAHATFYGDETASATMGGACGYGNLFINGYGTDTAALSSTLFNNGYACGACYQIQCYNSSACYYNVPYTIVTATNLCPPNWAKASDNGGWCNPPRAHFDMSKPAFMKIADWNAGIVPVMYRRAPCVRSGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWISMSHNWGASYQAFATLSGQALSFKIISYTTQQTIMAWNVAPSNWGVGLTYSSNVNFQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Dod05g1461 267 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Dod05g1461 267 SMART dpbb_1 76 162 IPR007112 -
Dod05g1461 267 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Dod05g1461 267 PRINTS Expansin signature 248 264 IPR002963 GO:0009664
Dod05g1461 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 172 IPR007112 -
Dod05g1461 267 PANTHER EXPANSIN 4 266 - -
Dod05g1461 267 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Dod05g1461 267 Gene3D - 26 167 IPR036908 -
Dod05g1461 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 262 IPR007117 -
Dod05g1461 267 PANTHER EXPANSIN-A15 4 266 IPR002963 GO:0009664
Dod05g1461 267 Pfam Expansin C-terminal domain 174 251 IPR007117 -
Dod05g1461 267 Gene3D - 173 267 IPR036749 -
Dod05g1461 267 Pfam Lytic transglycolase 76 162 IPR009009 -
Dod05g1461 267 SUPERFAMILY Barwin-like endoglucanases 40 190 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1461 Dod-Chr5 39218484 39220636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1461 5 267 Expansin Gene Family AT1G12560 65.399 6.71e-123 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1461 - - gmx:100781459 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1461 05 39218484 39220636 Dod02g1044 02 13068396 13070204 PCT