Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1456 ATGGGGAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGCCCTTGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGAGCTGTGCCAAAGCTTGCCGGCCTTAGGCGTTGCGGCAAGAGCTGCCGCCTTCGCTGGACTAACTACCTTCGGCCAGACTTGAAGAGAGGGCTCCTCACAGAAGCAGAGGAGCAGCTAGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCAGCCAAGTTACCAGGAAGAACAGACAATGAGATCAAAAATCATTGGAACACCCATATCAAGAAGAAACTTCTTAAGATGGGTATTGATCCCGTTAATCATGAACCTGTCAATAAACAAGCTTCATCGCAGGATAGTTCTTCCTCCACTGCAGGGCATTTGCCACAACCTGGCAACGACCATCAGATTAAGGAAACTGATGGGGTCCTCAACTCTGAGGAGAATTCAAGCTCATCCCCAGCTGAAAATTCTTCCGGGGAAGAGCCCCTTTTGCTAGATAGCATTTGCAGTGAAGACTCTCTTATGAATAGTCTGTGGCTTGATGAAACTCCACTGGTGGATGCGTTATGGGACACAACACCTAAAGTAGAGAATACAAATAATGGCATGGGCCTACTGCCATCTTGGGAGGATAATTGTGCTTGGTTATTTGACTGTGAGGACTTTGGTATTCATGATTTTGGATTTAGTTGCTTCAACGAGATAGAGTCAAGTTATGCAATGCAAACTATAGGACTGAAAGAAAAGGGTCCTTAG 813 0.4699 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVNHEPVNKQASSQDSSSSTAGHLPQPGNDHQIKETDGVLNSEENSSSSPAENSSGEEPLLLDSICSEDSLMNSLWLDETPLVDALWDTTPKVENTNNGMGLLPSWEDNCAWLFDCEDFGIHDFGFSCFNEIESSYAMQTIGLKEKGP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1456 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g1456 270 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dod05g1456 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g1456 270 CDD SANT 16 61 IPR001005 -
Dod05g1456 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod05g1456 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod05g1456 270 Gene3D - 71 144 - -
Dod05g1456 270 SMART sant 13 63 IPR001005 -
Dod05g1456 270 SMART sant 66 114 IPR001005 -
Dod05g1456 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod05g1456 270 CDD SANT 71 112 IPR001005 -
Dod05g1456 270 MobiDBLite consensus disorder prediction 125 180 - -
Dod05g1456 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 254 - -
Dod05g1456 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod05g1456 270 Gene3D - 12 67 - -
Dod05g1456 270 PANTHER PROTEIN ODORANT1-LIKE 2 254 - -
Dod05g1456 270 MobiDBLite consensus disorder prediction 128 148 - -
Dod05g1456 270 MobiDBLite consensus disorder prediction 161 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1456 Dod-Chr5 39124243 39126571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1456 1 262 MYB Transcription Factor Family AT4G12350 57.338 3.51e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1456 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1456 K09422 - gmx:100786965 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1456 05 39124243 39126571 Dod05g1456 05 39124243 39126571 ECH