Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1450 AGCTATTTAAATGCTGGGAGGGAGGTATATTTAGGGTTTGAGAAGCCGTCGTCTCCGAAGAAGAAGAAGAGCGGTCGCAACCCTAATCAGAAGCCGCGCAACTGCAATCCTCTGACAGTCGCAACCATGGGCCGTATGCACAGCCGCGGTAAGGGTATTTCCTCTTCTGCTTTGCCATACAAGAGGACCCCTCCAAGCTGGCTCAAGATCTCTTCTCAAGATGTGGAGGAGAACATATGCAAGTTCGCGAAGAAGGGTTTAACGCCGTCACAGATTGGTGTTATTCTTCGTGACTCTCATGGTATTGCTCAGGTCAAGAGTGTCACTGGCAGCAAAATCCTCCGCATTCTCAAAGCTCACGGACTTGCGCCTGAGATCCCTGAGGATCTGTACCATTTGATCAAGAAGGCAGTGTCGATTAGGAAGCATCTGGAGAGGAACAGAAAGGACAAGGACTCTAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACAGGCTTGCTCGCTACTACAAGAAGACCAAGAAGCTACCACCTGTGTGGAAGTACGAGTCAACAACTGCCAGCACCCTTGTTGCTTAG 582 0.4966 SYLNAGREVYLGFEKPSSPKKKKSGRNPNQKPRNCNPLTVATMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1450 193 Gene3D - 77 124 - -
Dod05g1450 193 MobiDBLite consensus disorder prediction 1 38 - -
Dod05g1450 193 CDD Ribosomal_S15p_S13e 112 185 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod05g1450 193 ProSitePatterns Ribosomal protein S15 signature. 140 170 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod05g1450 193 PANTHER 40S RIBOSOMAL PROTEIN S13 43 193 - -
Dod05g1450 193 PANTHER RIBOSOMAL PROTEIN S15P/S13E 43 193 IPR023029 -
Dod05g1450 193 Hamap 30S ribosomal protein S15 [rpsO]. 45 191 IPR023029 -
Dod05g1450 193 Pfam Ribosomal S13/S15 N-terminal domain 43 102 IPR012606 GO:0003735|GO:0005840|GO:0006412
Dod05g1450 193 SUPERFAMILY S15/NS1 RNA-binding domain 108 184 IPR009068 -
Dod05g1450 193 SMART Ribosomal_S15_2 112 191 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod05g1450 193 SMART Ribosomal_S13_N_2 43 102 IPR012606 GO:0003735|GO:0005840|GO:0006412
Dod05g1450 193 Gene3D - 125 193 - -
Dod05g1450 193 Pfam Ribosomal protein S15 116 186 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1450 Dod-Chr5 39041948 39043899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1450 43 193 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 94.040 7.21e-103 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1450 K02953 - egr:104442247 300.441