Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1412 ATGGCGGCAGAGTCTTTAAGGGTGGCGACTTCCTCTGTTTGGAACATCAATGGGTCTCAGAGGAGGCCAACCCTTTTGTCTCCGGTTCGCTTTATGGGTGTTCGTCCTCCACGTCCCTCTCACGCTTCCGCTTCGGCTTCACTTTCTCACTTCTTTGGAACTTCTCGAATCAGCGTCAATTCTTCCAAGTTATCCCATTTGCGCCAACACGGTCCAAGAAACCTCTCTGTTTTCGCCATGTCCGCTGATGAAACAAAGCGTGCTATTCCGTTGAGGGATTATCGCAACATTGGCATCATGGCTCACATCGATGCTGGGAAGACGACTACAACTGAGCGAATTCTCTACTATACTGGAAGAAACTACAAGATTGGAGAGGTACATGAGGGAACAGCAACCATGGACTGGATGGAACAAGAGCAGGAAAGAGGGATTACCATTACTTCTGCTGCAACCACTACGTTTTGGAATAAGCACCGTATCAACATTATCGATACCCCTGGACATGTTGACTTCACGTTAGAAGTGGAGCGTGCTCTTAGGGTCTTGGATGGAGCTATATGCCTGTTTGACAGTGTTGCTGGGGTAGAACCTCAGTCAGAAACCGTTTGGAGGCAAGCTGATAAATATGGGGTCCCACGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAATTTCTTCCGTACAAGAGACATGATAATAACAAACTTAGGTGCTAAACCACTTGTAGTTCAGATACCAATTGGTTCAGAAGACAGCTTCAAGGGAGTTGTTGATCTTGTTAGGATGAAAGCTATAGTTTGGTCTGGAGAAGAGTTGGGTGCCAAGTTTGATTATGAAGATATTCCTGCCAATCTTGAGGAGCTGGCCCAGGACTACAGATCCCAGTTGATAGAAACCATAGTTGAGTTGGACGATCAGACTATGGAGAAGTACCTTGAAGGGATTGAACCAGATGAAGAAACTATTAAAAAATTAATTAGGAAGGGAACCATATCAGCCATTTTTGTCCCAGTGTTGTGTGGCTCAGCCTTCAAAAACAAAGGTGTCCAACCATTGCTTGATGCTGTGGTGGATTATCTACCTTCACCGATTGACTTGCCACCAATGAAGGGCACTGACCCTGAAAACCCAGAAGTGACATTAGAGAGGGCAGCAAGTGATGATGAACCATTTTCTGGACTAGCTTTCAAGATCATGAGTGATCCATTTGTAGGCTCCCTTACATTTGTCAGGGTGTATGCTGGAAAGCTAACTGCAGGGTCTTATGTACTCAACGCCAACAAAGGGAAAAAGGAACGAATTGGTAGACTGCTAGAAATGCATGCGAACAGCAGAGAAGACGTTAAAACAGCTTTGACAGGTGACATTATTGCTCTTGCAGGTTTAAAAGATACTATTACGGGTGAAACATTGTGTGACCCTGACAAGCCGATTGTGCTTGAGCGAATGGACTTCCCTGATCCTGTCATAAAGGTTGCAATTGAACCCAAAACTAAAGCTGATGTTGACAGGATGGCTGCTGGTTTAATCAAGCTTGCACAGGAAGACCCTTCTTTCCACTTCTCCAGGGATGAAGAGATAAACCAGACAGTAATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGACTCAAAAGAGAATTTAAGGTGGAAGCTAATGTTGGCGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAGTCTCGGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACCGTTCGGTTTGAACCCATGGATCCAGGGAGTGGATATGAGTTCAAGAGTGAAATAAAAGGAGGTGCTGTACCAAGAGAGTACATTCCTGGGGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGTGTGCTTGCTGGCTTTCCAGTCGTTGATGTACGTGCGGTACTCGTGGATGGTTCTTACCATGATGTAGATTCAAGTGTGTTGGCATTCCAGTTGGCAGCAAGAGGAGCTTTCCGGGAGGGAATGAGAAAAGCTGGGCCAAGGATGCTTGAACCTATAATGAAGGTTGAAGTTGTTACTCCTGAGGAGCATCTAGGCGATGTAATTGGTGATCTCAACTCAAGAAGAGGCCAAATCAACAGCTTTGGTGACAAACCTGGTGGCCTTAAGGTGGTTGATGCTCTTGTTCCTCTTGCTGAGATGTTTCAGTACGTTAGTACTCTCAGAGGGATGACAAAGGGACGTGCTTCCTACACAATGCAATTAGGCATGTTTGATGTGGTGCCTCAGCACATTCAGAATCAACTAGGCCTCGAAGGAGCAAGAAGTTGCTGCTTAATTTACTTCATTGGCCTCCTAGCACGGAACATATTTTCCCTTGAATACTTGTATTATGCCCATTGTCCAATAGTTCGGGTTGTCTTTATCTTTTGTATTTTTTTTCATTGTAATTTTCCTTTTTCCCAATACATGATTAGCCAGAAAAAGAAATTCAGAAGGAAAGACAAACGAAACAGTTGGTCTTACCAAGTTGGAGAGAATGAACTGTAA 2559 0.4428 MAAESLRVATSSVWNINGSQRRPTLLSPVRFMGVRPPRPSHASASASLSHFFGTSRISVNSSKLSHLRQHGPRNLSVFAMSADETKRAIPLRDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVVQIPIGSEDSFKGVVDLVRMKAIVWSGEELGAKFDYEDIPANLEELAQDYRSQLIETIVELDDQTMEKYLEGIEPDEETIKKLIRKGTISAIFVPVLCGSAFKNKGVQPLLDAVVDYLPSPIDLPPMKGTDPENPEVTLERAASDDEPFSGLAFKIMSDPFVGSLTFVRVYAGKLTAGSYVLNANKGKKERIGRLLEMHANSREDVKTALTGDIIALAGLKDTITGETLCDPDKPIVLERMDFPDPVIKVAIEPKTKADVDRMAAGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLGMFDVVPQHIQNQLGLEGARSCCLIYFIGLLARNIFSLEYLYYAHCPIVRVVFIFCIFFHCNFPFSQYMISQKKKFRRKDKRNSWSYQVGENEL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1412 852 Pfam Elongation factor G, domain IV 563 681 IPR005517 GO:0005525
Dod05g1412 852 Hamap Elongation factor G, chloroplastic. 84 781 IPR030848 GO:0003746|GO:0006414|GO:0009507
Dod05g1412 852 PANTHER RIBOSOME-RELEASING FACTOR 2, MITOCHONDRIAL 80 772 - -
Dod05g1412 852 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 80 772 - -
Dod05g1412 852 SUPERFAMILY Ribosomal protein S5 domain 2-like 563 683 IPR020568 -
Dod05g1412 852 SUPERFAMILY Translation proteins 348 488 IPR009000 -
Dod05g1412 852 Pfam Elongation Factor G, domain III 488 561 IPR041095 -
Dod05g1412 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 365 IPR027417 -
Dod05g1412 852 Hamap Elongation factor G [fusA]. 90 776 IPR004540 GO:0003746|GO:0005525|GO:0006414
Dod05g1412 852 CDD EFG_mtEFG1_IV 567 682 IPR005517 GO:0005525
Dod05g1412 852 Pfam Elongation factor G C-terminus 685 771 IPR000640 -
Dod05g1412 852 CDD EFG_mtEFG_II 394 476 - -
Dod05g1412 852 Gene3D - 85 376 IPR027417 -
Dod05g1412 852 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 135 150 IPR031157 -
Dod05g1412 852 TIGRFAM EF-G: translation elongation factor G 87 772 IPR004540 GO:0003746|GO:0005525|GO:0006414
Dod05g1412 852 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 PRINTS GTP-binding elongation factor signature 142 150 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 TIGRFAM small_GTP: small GTP-binding protein domain 94 264 IPR005225 GO:0005525
Dod05g1412 852 Pfam Elongation factor Tu domain 2 408 475 IPR004161 GO:0005525
Dod05g1412 852 CDD EFG_mtEFG_C 687 765 IPR035649 -
Dod05g1412 852 Gene3D - 688 759 - -
Dod05g1412 852 SUPERFAMILY EF-G C-terminal domain-like 488 565 IPR035647 -
Dod05g1412 852 SUPERFAMILY EF-G C-terminal domain-like 687 772 IPR035647 -
Dod05g1412 852 SMART EFG_C_a 684 772 IPR000640 -
Dod05g1412 852 Pfam Elongation factor Tu GTP binding domain 93 365 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 Gene3D Elongation Factor G (Translational Gtpase), domain 3 491 568 - -
Dod05g1412 852 SMART EFG_IV_2 564 682 IPR005517 GO:0005525
Dod05g1412 852 CDD EFG_III 489 564 IPR009022 -
Dod05g1412 852 Gene3D Translation factors 377 490 - -
Dod05g1412 852 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 367 IPR000795 GO:0003924|GO:0005525
Dod05g1412 852 CDD EF-G 96 366 - -
Dod05g1412 852 Gene3D - 569 771 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1412 Dod-Chr5 38464931 38469396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1412 81 752 Eukaryotic Initiation Factors Gene Family AT1G56070 25.272 7.02e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1412 K02355 - gmx:102663021 1384.78