Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod05g1411 | ATGGCGGACGAAGCCAAAGCCAAGGGCAACGCCGCCTTCTCCTCAGGCGACTTCACCGCCGCCGTCCGCCACTTCTCCGACGCCATCACCCTCTCCCCTGACAACCACGTCCTCTACTCCAATCGATCCGCCGCCTACGCCTCCCTCCACGACTACTCCCAAGCCTTGTCCGACGCACAGAAGACCGTCGACCTCAAGCCCGACTGGCCCAAAGGCTACAGCCGCCTCGGCGCCGCCCACATCGGCCTCGCCCACCACTACGACGCCGTTTCCGCCTACAAAAAAGGCCTCGAAATCGATCCCAACAACGAAGCCCTAAAATCCGGCCTTGCCGACGCCCAGGCGGCCGCTGCATCGGCGAGGTCCCGTTCTCCGCCTGGGAATCTGTTCGGCGATGTGTTCTCTGGGCCGGAGATGTGGGCCCGGCTGACCGCCGACCCTACCACCCGGGCTTTCCTCCAGCAACCTGATTTCTTGAAGATGATGCAGGATATTCAGAAGAATCCGAACAATTTGAACGCGTACGTCAAGGATCAGAGAGTGATGCAAGCCCTTGGGGTTTTGCTCAACATGAAGGTGACGCGTGATGATGACGGTGGCGACGAGATTATGCCGGAGGCTTCGGCGGAGCCGTCCCCGCCACCGGAGAGGAAGCGGGCAGCGGAGGAGGTGACGGAGGAGGCGAAGGAGAGGAAGGGTTTGGCTCAGAAGGAGAAGGAGGCAGGGAATGCGGCATATAAGAAGAAGGAGTTTGAGAGTGCGATTCAGCATTACACGAACGCTTTGGAGTTGGATGATGAGGATATATCGTTCCTCACCAACCGTGCCGCTGTTTACTTGGAGATGGGCAAGTATGAAGAATGCATAAAAGATTGTGACAAGGCTGTTGATAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCATTGGTCAAAATGGCAAAGTGCTCAAATGATTATGAACCTGCCATTGAGACTTTCCAAAAAGCACTTACAGAGCACCGTGACCGAGACATCTTGAAAAAACTCAATGAAGCTGAAAAAGCTAAGAAAGAATTAGAACAAGAAGAATATTTTGATCCACAATTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTCAAGCAGCAAAAGTATCCTGAGGCTGTGAAGCGTTATACAGAGGCTATAAAGAGGAACCCGAAAGATCATAAGGCTTACAGTAACAGAGCTGCATGCTACACAAGACTGGGGGCAATGCCTGAAGGTCTAAAGGATGCAGAGATGTGCATTGAGCTGGATCCAACCTTTTCGAAGGGTTATACTAGGAAAGGTGCAGTACAGTTTTTCATGAAAGAATATGACAAAGCCTTGGAAACATACAAGGAGGGGTTGAAACATGACCCTAACAACCAGGAACTGCTTGATGGTATTAGAAGTTGTGTAGAACAAATTAATAAGGCTAGTCGTGGGGATTTAAGTCCAGAAGAGTTGAAGGAGAGACAGGCCAGGGCAATGCAGGACCCAGAAATACAGAACATCCTTCAGGACCCTGTCATGAGACAAGTATTGATTGATTTCCAGGAAAATCCTAAGGCTGCACAGGAACATACAAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTAATCAGTGCTGGAATTGTCCAGATGAGGTGA | 1692 | 0.5059 | MADEAKAKGNAAFSSGDFTAAVRHFSDAITLSPDNHVLYSNRSAAYASLHDYSQALSDAQKTVDLKPDWPKGYSRLGAAHIGLAHHYDAVSAYKKGLEIDPNNEALKSGLADAQAAAASARSRSPPGNLFGDVFSGPEMWARLTADPTTRAFLQQPDFLKMMQDIQKNPNNLNAYVKDQRVMQALGVLLNMKVTRDDDGGDEIMPEASAEPSPPPERKRAAEEVTEEAKERKGLAQKEKEAGNAAYKKKEFESAIQHYTNALELDDEDISFLTNRAAVYLEMGKYEECIKDCDKAVDRGRELRSDFKMIARALTRKGTALVKMAKCSNDYEPAIETFQKALTEHRDRDILKKLNEAEKAKKELEQEEYFDPQLADEEREKGNEFFKQQKYPEAVKRYTEAIKRNPKDHKAYSNRAACYTRLGAMPEGLKDAEMCIELDPTFSKGYTRKGAVQFFMKEYDKALETYKEGLKHDPNNQELLDGIRSCVEQINKASRGDLSPEELKERQARAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLISAGIVQMR* | 564 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod05g1411 | 563 | MobiDBLite | consensus disorder prediction | 196 | 241 | - | - | |
| Dod05g1411 | 563 | Coils | Coil | 218 | 238 | - | - | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 442 | 475 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 408 | 441 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 269 | 302 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 374 | 407 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 442 | 475 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 310 | 347 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 235 | 268 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | Gene3D | Tetratricopeptide repeat domain | 1 | 116 | IPR011990 | GO:0005515 | |
| Dod05g1411 | 563 | Gene3D | Tetratricopeptide repeat domain | 372 | 487 | IPR011990 | GO:0005515 | |
| Dod05g1411 | 563 | Gene3D | - | 493 | 563 | - | - | |
| Dod05g1411 | 563 | Pfam | Tetratricopeptide repeat | 72 | 103 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 70 | 103 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | SUPERFAMILY | TPR-like | 8 | 477 | IPR011990 | GO:0005515 | |
| Dod05g1411 | 563 | SMART | CBM | 136 | 175 | IPR006636 | - | |
| Dod05g1411 | 563 | SMART | CBM | 512 | 551 | IPR006636 | - | |
| Dod05g1411 | 563 | Pfam | Tetratricopeptide repeat | 443 | 475 | IPR001440 | GO:0005515 | |
| Dod05g1411 | 563 | Pfam | STI1 domain | 504 | 555 | IPR041243 | - | |
| Dod05g1411 | 563 | Pfam | STI1 domain | 137 | 190 | IPR041243 | - | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 374 | 407 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | PANTHER | HSP70-HSP90 ORGANIZING PROTEIN 3 | 1 | 562 | - | - | |
| Dod05g1411 | 563 | Coils | Coil | 346 | 367 | - | - | |
| Dod05g1411 | 563 | MobiDBLite | consensus disorder prediction | 212 | 241 | - | - | |
| Dod05g1411 | 563 | Gene3D | - | 126 | 193 | - | - | |
| Dod05g1411 | 563 | Pfam | TPR repeat | 381 | 422 | - | - | |
| Dod05g1411 | 563 | Pfam | TPR repeat | 242 | 283 | - | - | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 2 | 35 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | Pfam | Tetratricopeptide repeat | 7 | 67 | - | - | |
| Dod05g1411 | 563 | PANTHER | TPR REPEAT CONTAINING PROTEIN | 1 | 562 | IPR045248 | GO:0006457|GO:0030544|GO:0051879 | |
| Dod05g1411 | 563 | ProSiteProfiles | TPR repeat profile. | 235 | 268 | IPR019734 | GO:0005515 | |
| Dod05g1411 | 563 | Gene3D | Tetratricopeptide repeat domain | 232 | 368 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod05g1411 | Dod-Chr5 | 38456271 | 38460592 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod05g1411 | 1 | 99 | U-box Gene Family | AT3G07370 | 26.263 | 1.71e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod05g1411 | K09553 | - | vvi:100855394 | 890.182 |