Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1405 ATGTCATCCTCTTCCACTACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCAATGCAACATTTGTGACACAGTCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTGCGATGCGGCCATTGCACCAACCTCCTGCCAGTGAGCATGCGCGGCTTGCTTCTTCCATCGGCAAATCAATTTCATTTGGGCCACTCTTTCTTCTCCCCAGCTCATAGCCTTCTGGAGGAGCTGCCAAATCCGGCTCCAAATTTCTTTATCAATCAGACAAACACATCAAATGACTTCTCCATGCCTGCTAGGACTCCAGTGGATGAGCTTCCAAGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCATACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATAACCCACAGGGAAGCCTTCAGCGCAGCAGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGCGAAGAAGACAAATGTGCGCCAGCAGGAAGGAGATGAGGTTCTCATGAAAGATGCAGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTAA 645 0.4946 MSSSSTTLSLDHLPPSEQLCYVQCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVSMRGLLLPSANQFHLGHSFFSPAHSLLEELPNPAPNFFINQTNTSNDFSMPARTPVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTAKKTNVRQQEGDEVLMKDAGFYASANVGVSPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1405 214 MobiDBLite consensus disorder prediction 109 128 - -
Dod05g1405 214 PANTHER PROTEIN YABBY 6-RELATED 1 212 IPR006780 GO:0007275
Dod05g1405 214 Gene3D High mobility group box domain 122 195 IPR036910 -
Dod05g1405 214 SUPERFAMILY HMG-box 121 170 IPR036910 -
Dod05g1405 214 Pfam YABBY protein 15 177 IPR006780 GO:0007275
Dod05g1405 214 PANTHER PROTEIN YABBY 4 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1405 Dod-Chr5 38362098 38365558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1405 26 212 C2C2-YABBY Transcription Factor Family AT4G00180 58.373 9.40e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dod05g1405 YABBY 1.6e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1405 K25796 - gmx:100798441 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1405 05 38362098 38365558 Dod05g1405 05 38362098 38365558 ECH