Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1400 ATGGATTTGAAGTCCTCTCATGCTGCTCCTATTCTTACCGATCCTGTTCCAGTCAACAAGTCAAGGCTTGGAATCCATTCTGGTCTACTATCATATTCCCAGCAAGACTCATCACCACACTCTTCTGGAAAGTTCTCGAGAAACAGTCCAAGGAAAAGTGTTGGGAGCCTTGATGATGTCAGATCCAATGGTTGGCTTGATGCCATGAAGGCATCTTCACCTCCAAGGAAGAAGTTACTCAAAGGCTCCAGTGCTCAGGTTGTCTCAGTGGACCATGACTTTGAAGACTATCACTCATGGATGCTTGGTTATCCTTCAGCACTAGGCTCTTTTGAGAAAATTATTAACCGTGCAAAGGGTAAGAAGATTGCAATGTTTCTGGACTATGATGGCACACTTTCGCCAATAGTAGATGATCCAGATTGTGCCTTTATGTCCGAAGCTATGCGTGCAACTGTAAGAAGTGTGGCAAAGTATTTCCCCACGGCGATCATCAGTGGAAGAAGCCGTGACAAGGTCTTCGATTTAGTTAAGCTAACGGAACTCTACTATGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTGTGTCCAAAAACCATCCAACTTGTGCCAAATCTACTGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCCAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAGCCCTCGTCGAGATTACTAAAGATATTGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAACAATTGGACAACGTGTCCATGATATCTTGAAAAATTATCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAATCCGTCCTGTGATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCCTGGGTTAACAGATAGGAAAGATGTGCTTCCAATCTACATTGGTGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGTGAGAGCAATCTTGGCTGCGGGATTTTGGTTTCGTCAGTGAGAAAAGAAAGCAGTGCCTTATACTCTCTGCGGGACCCCGCTGAGGTCATGAAGTTTCTCCAACTCTTGGTGAACTGGAAGAGGCAGGAAGAAAGGAAGCATGGGATCGGAATAAATAAACGGCAGAGTTTAGGCATTTAG 1209 0.4334 MDLKSSHAAPILTDPVPVNKSRLGIHSGLLSYSQQDSSPHSSGKFSRNSPRKSVGSLDDVRSNGWLDAMKASSPPRKKLLKGSSAQVVSVDHDFEDYHSWMLGYPSALGSFEKIINRAKGKKIAMFLDYDGTLSPIVDDPDCAFMSEAMRATVRSVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETVSKNHPTCAKSTDHQGKEITLFQPAREFLPMIDEVFRALVEITKDIEGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDILKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESPGLTDRKDVLPIYIGDDKTDEDAFKVLRESNLGCGILVSSVRKESSALYSLRDPAEVMKFLQLLVNWKRQEERKHGIGINKRQSLGI* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1400 402 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 125 343 IPR006379 -
Dod05g1400 402 Pfam Trehalose-phosphatase 126 369 IPR003337 GO:0003824|GO:0005992
Dod05g1400 402 TIGRFAM T6PP: trehalose-phosphatase 120 380 IPR003337 GO:0003824|GO:0005992
Dod05g1400 402 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 389 - -
Dod05g1400 402 MobiDBLite consensus disorder prediction 31 56 - -
Dod05g1400 402 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 389 IPR044651 GO:0004805|GO:0005992
Dod05g1400 402 CDD HAD_TPP 124 374 - -
Dod05g1400 402 SUPERFAMILY HAD-like 124 384 IPR036412 -
Dod05g1400 402 MobiDBLite consensus disorder prediction 31 59 - -
Dod05g1400 402 Gene3D - 218 393 IPR023214 -
Dod05g1400 402 Gene3D - 123 214 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1400 Dod-Chr5 38292200 38296261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1400 121 376 Trehalose Biosynthesis Gene Families AT1G23870 25.092 2.03e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1400 K01087 - tcc:18606311 558.525