Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1350 ATGGCACCCAAGAATGATGAATCAACTAAGAAAGGAGTGAACAGAGGAGCATGGACCCCAGAAGAAGATAGAAAGCTAGCACAATGCATTGGAATTCATGGTGCAAAGAGGTGGAAGACTATTGCAATAAAATCAGGTCTAAAAAGATGTGGAAAGAGCTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGAGGAAACATATCAGATGAAGAGGAGGATATGATTCTTAGGCTTCACAAACTTTTAGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAATTCTCATTTGTGCAAAAAAGCCAATCACAAAGAGGAAAACCCAGAAACTTCAACAGCGCAAGAAAGTGTCACACGGGACCATAACACTACTGGTGACAGTGCAATGTTGGAACGTGACGATGCCATTGATGGGAGTGATAACTCAGATGTTAACTTCGACGTGGACGAATTCCTTGACTTCTCCACAGAAGGACCCTTTGGGCTTGATTGGTTGAACAAGTATTTAGAACTTGATGAGAGTGGGAAGGGCACAAAAGAAGGCATGAATGAGCATTGTGGAGGTCAGTAG 618 0.432 MAPKNDESTKKGVNRGAWTPEEDRKLAQCIGIHGAKRWKTIAIKSGLKRCGKSCRLRWLNYLRPNIKRGNISDEEEDMILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKANHKEENPETSTAQESVTRDHNTTGDSAMLERDDAIDGSDNSDVNFDVDEFLDFSTEGPFGLDWLNKYLELDESGKGTKEGMNEHCGGQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1350 205 Gene3D - 71 142 - -
Dod05g1350 205 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Dod05g1350 205 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dod05g1350 205 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dod05g1350 205 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 191 - -
Dod05g1350 205 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 3 191 - -
Dod05g1350 205 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dod05g1350 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Dod05g1350 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Dod05g1350 205 CDD SANT 72 113 IPR001005 -
Dod05g1350 205 SMART sant 67 115 IPR001005 -
Dod05g1350 205 SMART sant 14 64 IPR001005 -
Dod05g1350 205 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod05g1350 205 Gene3D - 7 68 - -
Dod05g1350 205 MobiDBLite consensus disorder prediction 118 142 - -
Dod05g1350 205 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1350 Dod-Chr5 37484011 37486237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1350 7 134 MYB Transcription Factor Family AT5G52600 61.240 1.01e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1350 Myb_DNA-binding 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1350 K09422 - qsu:111999826 289.271