Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1348 ATGGAAGGAGCTGTCCTAATAGAAAGTGAAGTACAACCAACAACCTCCTCCTCTTCCTCTTCCTTTTCTTCTTCTTCCTCCACAGAAGAAGCTAACAACACCCAAAGGAAAACTCAACAGGGCAAAGAATTGTGCAGCGATGAAGCAAACAACATTGAGGATGAGAAGAACAAGAACAAGAAGAAGGCATTGAAGAGAAGCAATGATGGGAAGCACCCCACGTACAGAGGAGTACGCATGCGCCAATGGGGTAAATGGGTATCCGAAATCAGGGAGCCAAGGAAGAAATCAAGGATTTGGCTTGGCACTTTTCCCACACCCGAGATGGCAGCTCGGGCCCACGACGTGGCGGCTCTTACAATAAAGGGCAGCTCGGCCTACCTCAATTTTCCTGAGCTAGTGGCCGAGCTACCTCGCCCAACTAGCAATTGTCCTAAGGACATACAGGCGGCTGCCTTAGCTGCAGCCGCCATGAATTATCACTGTCGAACCGATGAAGCCGAGTCTGAGTTGAGCCGGGATGATTCCTTGTCAAGCCATACCCAAGGATTGTCAAATTCATCATTGAAGGGTGAGGATGACACATTCTTGGACCTCCCTGATCTCTCATTAGACTTGAATCATAGTGCTGATGAGTTTCATTACTCATCGGCTTGGCTTGTAGCCGGAGCCGAACATCTTGACCTCCCATGTTTCCGGCTTGAAGAGCCTTTTCTGTGGGAGCCCTATTAA 732 0.4904 MEGAVLIESEVQPTTSSSSSSFSSSSSTEEANNTQRKTQQGKELCSDEANNIEDEKNKNKKKALKRSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALTIKGSSAYLNFPELVAELPRPTSNCPKDIQAAALAAAAMNYHCRTDEAESELSRDDSLSSHTQGLSNSSLKGEDDTFLDLPDLSLDLNHSADEFHYSSAWLVAGAEHLDLPCFRLEEPFLWEPY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1348 243 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Dod05g1348 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 227 - -
Dod05g1348 243 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 16 227 - -
Dod05g1348 243 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 MobiDBLite consensus disorder prediction 176 190 - -
Dod05g1348 243 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 MobiDBLite consensus disorder prediction 1 77 - -
Dod05g1348 243 MobiDBLite consensus disorder prediction 171 190 - -
Dod05g1348 243 MobiDBLite consensus disorder prediction 41 76 - -
Dod05g1348 243 MobiDBLite consensus disorder prediction 9 40 - -
Dod05g1348 243 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
Dod05g1348 243 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1348 Dod-Chr5 37406205 37407611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1348 65 239 AP2-EREBP Transcription Factor Family AT2G44940 49.761 1.11e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g1348 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1348 - - gmx:100101914 286.189