Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1341 ATGATGGTTGAAAAGGAAGAGTTGGGTTTGAGTCTAAGCTTGAACATCCATCAGAATAACCCAAATCCACAGCATCTGAATCTCATCATGTCGTCTTCCACTACTCATTCTAATTCTCCTTCTGGCTGCAACCCTCAGAAACCCTCTTGGAATGAGGCTTTCACTTCCTCTGATCGAGACCCGGAAACATGCAGAGGAGAAGCAGCACGGTCTTTCCTGCGGGGGATCGACGTGAACAGGTTTCCGTCGGGGGTTGACTGCGAAGAGGAAGCTGGCGCGTCGTCGTCCCCCAACAGCACGGTGTCGAGCGTGATGAGCGGGAAACGAAGCGAGAGAGAAGAATTGTTAGAGAACGAGATGGATAGAGCCTGTTCTCGAGGGATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTCAGGCTCTCCAAAGACCAATCTGCTGTTCTCGAAGAGAGCTTCAAAGAGCACAATACCCTTAACCCCAAGCAAAAGTTGGCACTGGCAAAGCAGCTAGGTCTCAGACAGAGACAAGTCGAGGTCTGGTTTCAGAACAGAAGGGCTAGGACGAAGCTGAAGCAAACTGAGGTGGACTGCGAGGTGTTGAAGAGGTGCTGCGAGACTCTGACGGAAGAGAACAGGAGGCTCCAGAAGGAGGTTCAGGAGCTGAGAGCACTGAAACTCTCCCCTCAGTTCTACATGCAAATGACCCCACCCACCACCCTCACCATGTGCCCTTCTTGTGAGCGTGTAGCTGTTCCCTCTGATGCTGCCGCTCCCCGTCACCACCCCATGGCCCAAGCCCACCCTCGGCCCATACCCATCGGCCCATGGGCTTCCTCTGCTCCCATCCCACACCGCCCATTCGATGCCTGCCATCGCTGA 888 0.5394 MMVEKEELGLSLSLNIHQNNPNPQHLNLIMSSSTTHSNSPSGCNPQKPSWNEAFTSSDRDPETCRGEAARSFLRGIDVNRFPSGVDCEEEAGASSSPNSTVSSVMSGKRSEREELLENEMDRACSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRQRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSDAAAPRHHPMAQAHPRPIPIGPWASSAPIPHRPFDACHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1341 295 MobiDBLite consensus disorder prediction 30 62 - -
Dod05g1341 295 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Dod05g1341 295 MobiDBLite consensus disorder prediction 30 57 - -
Dod05g1341 295 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Dod05g1341 295 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Dod05g1341 295 CDD homeodomain 138 195 IPR001356 GO:0003677
Dod05g1341 295 MobiDBLite consensus disorder prediction 92 106 - -
Dod05g1341 295 MobiDBLite consensus disorder prediction 86 143 - -
Dod05g1341 295 Coils Coil 200 230 - -
Dod05g1341 295 SUPERFAMILY Homeodomain-like 128 195 IPR009057 -
Dod05g1341 295 MobiDBLite consensus disorder prediction 107 143 - -
Dod05g1341 295 Gene3D - 142 192 - -
Dod05g1341 295 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Dod05g1341 295 PRINTS Lambda-repressor HTH signature 174 190 IPR000047 GO:0003677
Dod05g1341 295 PRINTS Lambda-repressor HTH signature 165 174 IPR000047 GO:0003677
Dod05g1341 295 SMART HOX_1 136 198 IPR001356 GO:0003677
Dod05g1341 295 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 287 - -
Dod05g1341 295 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Dod05g1341 295 PANTHER - 5 287 - -
Dod05g1341 295 Pfam HD-ZIP protein N terminus 2 113 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1341 Dod-Chr5 37283476 37286670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1341 1 283 Homeobox Transcription Factor Family AT5G47370 60.811 1.81e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod05g1341 HD-ZIP_N 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1341 K09338 - gmx:100813367 460.299