LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1339	ATGCTAATAGAGGAATTGAAGGTGGGTGCGGTTGGGGTTGGGGTTGAGGTTGAGGTGGGAGAAAGTGGAGGAGAGGAAGAGAGGCCGTCAAGGTTTGTGGGTTATGATGCGAAAAGGGTTCTGGTTGGAGCAGGGGCTCGTGCGCTCTTCTATCCCACACTGTTTTACAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTCCCCATTGATGTTCCCCACCTGAAGGAGCTTGGTGTTCGTGGGGTTGTCACATTGAACGAGTCATATGAGACTCTGGTTCCGACCACATTATATTATGCTCATGGAATTGAGCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCAAAATTGCATGACATATGCCGTGCAGTGGACTTCATACATGAAAATGCATTGTCTGGACACACTACCTATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTAATGACACCTGCTGCTGCATATGATTATGTGAAGTCGATTCGGCCAAGGGTGCTTCTAGCTTCATCTCAGTGGCAAGCTGTTCAGGAGTACTACTGCCACCTGATGGTGAGGAGGGCTGTTGGACGTGCTCCTACAGGAGATCTATTAGTAAAGGCTTCTGAGGCAGCAGTTGCTTCACGAGATCTTATTAGGTTTGATGACAACTCTGTAGTTGTGGTAGCAGAGTCAGATCTTGAAGGATACGACCCAAGCATTCAGTCGGGAATCATGCCAAGTGAAATATGGGCAGATTTAAGTGTGGTTTATCGCGTACGAGTTGCTGGACGGGCAGCATTGGCGAGAATCTCATGCCTTTGGGTACGGTATGGTACTAACCAGAAGATCTCTGCGGAGAAACTGAGCAGTGACAGCAGTTGCTCAGTGCGGACTAATAACTTGGGGGGAATTAGTATTGATATCCATGTATATTGA	1011	0.4688	MLIEELKVGAVGVGVEVEVGESGGEEERPSRFVGYDAKRVLVGAGARALFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPHLKELGVRGVVTLNESYETLVPTTLYYAHGIEHLVIPTRDYCFAPKLHDICRAVDFIHENALSGHTTYVHCKAGRGRSTTIVICYLVHHKLMTPAAAYDYVKSIRPRVLLASSQWQAVQEYYCHLMVRRAVGRAPTGDLLVKASEAAVASRDLIRFDDNSVVVVAESDLEGYDPSIQSGIMPSEIWADLSVVYRVRVAGRAALARISCLWVRYGTNQKISAEKLSSDSSCSVRTNNLGGISIDIHVY*	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1339	336	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	69	216	IPR020422	GO:0006470\|GO:0008138
	Dod05g1339	336	SMART	dsp_5	72	213	IPR020422	GO:0006470\|GO:0008138
	Dod05g1339	336	Pfam	Dual specificity phosphatase, catalytic domain	109	211	IPR000340	GO:0008138\|GO:0016311
	Dod05g1339	336	CDD	PTPMT1	69	211	IPR044596	GO:0004721
	Dod05g1339	336	Gene3D	Protein tyrosine phosphatase superfamily	69	219	IPR029021	-
	Dod05g1339	336	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED	1	336	-	-
	Dod05g1339	336	ProSitePatterns	Fructose-bisphosphate aldolase class-II signature 2.	15	26	IPR000771	GO:0005975\|GO:0008270\|GO:0016832
	Dod05g1339	336	ProSitePatterns	Tyrosine specific protein phosphatases active site.	158	168	IPR016130	GO:0016311\|GO:0016791
	Dod05g1339	336	PANTHER	-	1	336	-	-
	Dod05g1339	336	SMART	ptp_7	111	215	IPR003595	-
	Dod05g1339	336	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	61	214	IPR029021	-
	Dod05g1339	336	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	137	205	IPR000387	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1339	Dod-Chr5	37246567	37251697	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1339	38	336	Protein tyrosine phosphatase (PTP) family	AT2G35680	59.935	2.78e-126	363

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1339	-		-	adu:107485250	531.946