Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1336 ATGGCGAACCAAGCTGAAATTTCAGCCCTGAACCACATCAAGTTGCATCTCTTAGGTGAACTCTCACCGCTGGGAACACCAGAGTTCACACAGAACAAACTCTGCTTTGAATTCCACGAATCAAACCCTAGCTCCTCTCAATCTGAGTCCCAATCCATTTCTTCTTCTTCGTCTTCCGAATCCTCAACATCTCTCGATAACCTCTTCACCGGCTTCATCGAAACAGAAGCCCACCTTCCCCTCTTCGAATTCGATTCCAACCCCCAATCAATCGACCGAACCCTGATTCAAAACCAAAACCCCCAAATCGACGCGGAGAACAACAATAAGCCTCGCCTCAGTCGGAAACCCGCGCTGCAAATCTCGCTCCCGAGGAAGAAGACCGAGTGGATCCAGTTCGGGAAACCGGAGCCCGAACCGGAGGCAGTTGCGGTTCCGGGACCACCGCAGCAGGAGGAGTCAGCGGCGGCCCCGGCGGAGAAGAAGCACTACAGAGGGGTGCGGCAGAGGCCGTGGGGGAAGTTCGCCGCCGAGATCCGTGACCCGAACAAGCGGGGGTCCAGGGTGTGGCTCGGCACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGTGCTGCCTTCAAGCTCAGAGGCTCCAAGGCCATCCTCAACTTCCCGCTGGAAGTTGATGCGGTGTCGGCCGCCTCCTCCTCCGCCGACGCCGGCGGCGGAGAGAGGAAGCGCCGCCGCGAAGAGGTGAAGGCGGAGGAAGTGGAAGTGAAGGCGGTGAAGAAAGAGAAGACGGAGGAATCGGACGTTAACTGTGTTAGGGAAGTACCGTTAACGCCGTCTGTTTGGACCGGGTTCTGGGACAGTGATGTTAATGGGATTTTTAACGTTCCGCCGTTGTCGCCGTTATCTCCCCTGCCGCCTTTTGGTTTTCCACAGCTTATGGTTGTCTGA 948 0.5696 MANQAEISALNHIKLHLLGELSPLGTPEFTQNKLCFEFHESNPSSSQSESQSISSSSSSESSTSLDNLFTGFIETEAHLPLFEFDSNPQSIDRTLIQNQNPQIDAENNNKPRLSRKPALQISLPRKKTEWIQFGKPEPEPEAVAVPGPPQQEESAAAPAEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVDAVSAASSSADAGGGERKRRREEVKAEEVEVKAVKKEKTEESDVNCVREVPLTPSVWTGFWDSDVNGIFNVPPLSPLSPLPPFGFPQLMVV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1336 315 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 300 - -
Dod05g1336 315 MobiDBLite consensus disorder prediction 230 249 - -
Dod05g1336 315 MobiDBLite consensus disorder prediction 40 64 - -
Dod05g1336 315 Pfam AP2 domain 163 213 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Dod05g1336 315 Gene3D AP2/ERF domain 162 223 IPR036955 GO:0003700|GO:0006355
Dod05g1336 315 Coils Coil 241 261 - -
Dod05g1336 315 SUPERFAMILY DNA-binding domain 163 223 IPR016177 GO:0003677
Dod05g1336 315 MobiDBLite consensus disorder prediction 138 167 - -
Dod05g1336 315 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1336 Dod-Chr5 37195052 37195999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1336 1 315 AP2-EREBP Transcription Factor Family AT5G47230 47.368 5.30e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g1336 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1336 K09286 - gmx:100800453 279.256