Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1320 ATGGGCAAGCAGGGTCCATGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTGTGCAATGCATGTGGTTCTCGCTGGAGGACAAAAGGAACACTTGCAAATTATACTCCTTTACACGCTCGGACAGAAACTGATGATTCTGAAGATCAAAGAGCTTCCAGGGTAAAGAACATACCATTGAACAAAAATAAAGAAGTGAAATTGCTCAAGCGAAAGCAGAATGATTATGCTGCATCTGGAGGGCTTGTCCCTGATTACAATCAAGGGTTCCGAAAGGTTGTGGATGAAGATACGAGCAATAGATCGAGCTCAGGGTCAGCTGGCTCTAACTTAGAGAGCTGCGCTCATTTTGGTGGCATGGATGCTAGTGATTTGACAGGTCCTGTTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCCTCTCCTGTTGAGAAGCTCACTAAAGATTTATGTACTATTCTTCATGAACAGCAGTCTTATTTTTCTGCATCTTCTGAAGACGATCTTCTTTTTGAGAGTGAAGCACCGATGGTATCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCACCCGAGCTCTATAACTCGTGAGGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAGTGAGGCATATTCATGTTCTGGTGCCATTCCTATGCATAGTGACTGCAGTGGAGTGAACTCATCACAGGGAGTTGAAAAGCTCAGAAACTCTACGGGGAAAGTAATTCAACAGGAGCAACTTCAAAGGGACAAGTCACAGCTTGAAAGATTACAAGTCCTTGGAAATCATGATTCACCATTATGCTTAATAGATTTAAATGATGTAGTGAACTATGAGGAGTTTACAAGAAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAATATCTTCCTGTGGTTGATACTGCTGAACCTCCTGATAGCCTTAAAGTCATGTTCAACAGCTCTCAATTCAAGGAGAACTTAAGTTATTTTCAGCAACTTCTCAGGGATGGTGTCTTTGATATCTCCTTGTTGGGTGCAAAACCTGAAGACTGCAGGACATTGAAGAGGCTTGCATTATCTAATCTGTCAATGTTGAAATGGGTAGAACACTATAATTTTCTCAAGATATGTAATAACAAAGCTGGAAAATCTATTGCTCTGGAATCTGCTGCTATGGCATCAAGTAATGTCACAAAAGTCAAGAGATTGCATGACAGCCAAAATCAAAATTTTCAAGAATTGAAGACAACAATGAGGATCCCCAAAAGGGTGATCATGAAGTCTGGCTGTGAGGGCAAAGAAGCTGTGGAAGATGGCTCTTGCTTCAGTCCAAGAAACCTATTTGCCTTGCCTCAAGATGGTAGCTCCCTCGTATTGGATTCTTTGAACTTTGTTGATGAGAATTCTGATCAGGATCTGCTGCTGGAGGTGCCATCTAACAGTTCTTTTCCGCAGGCAGAACTCCTGCACCCAACTTTAAGCATTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGTTAAATCAAATGTTACCCATCCTTAA 1617 0.4267 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDSEDQRASRVKNIPLNKNKEVKLLKRKQNDYAASGGLVPDYNQGFRKVVDEDTSNRSSSGSAGSNLESCAHFGGMDASDLTGPVQSVVWDAMVPSKKRTCAGRPKPSPVEKLTKDLCTILHEQQSYFSASSEDDLLFESEAPMVSVEIGHGSILIRHPSSITREEESEASSLSVDNKQCLMSEAYSCSGAIPMHSDCSGVNSSQGVEKLRNSTGKVIQQEQLQRDKSQLERLQVLGNHDSPLCLIDLNDVVNYEEFTRNLTNEEQQQLLKYLPVVDTAEPPDSLKVMFNSSQFKENLSYFQQLLRDGVFDISLLGAKPEDCRTLKRLALSNLSMLKWVEHYNFLKICNNKAGKSIALESAAMASSNVTKVKRLHDSQNQNFQELKTTMRIPKRVIMKSGCEGKEAVEDGSCFSPRNLFALPQDGSSLVLDSLNFVDENSDQDLLLEVPSNSSFPQAELLHPTLSIGAQASTSSSSVKSNVTHP* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1320 538 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 538 - -
Dod05g1320 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Dod05g1320 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Dod05g1320 538 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Dod05g1320 538 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Dod05g1320 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Dod05g1320 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Dod05g1320 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Dod05g1320 538 Pfam Asx homology domain 281 365 IPR028020 -
Dod05g1320 538 Gene3D - 282 390 IPR038108 -
Dod05g1320 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 293 404 IPR044867 -
Dod05g1320 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1320 Dod-Chr5 36898684 36904521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1320 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.484 2.86e-158 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod05g1320 ASXH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1320 - - gmx:100799745 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0927 02 11838745 11844385 Dod05g1320 05 36898684 36904521 PCT