Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1317 ATGGAACCTAAGCACCAACTTGGCCTTGTTTGCGTTATACTGTTGTTACCTGCACTGTGTAGCGCCTCGTATGCTTTTACGAAATCCAGAGCATCCTTTTATAGCACCCCTGATGGCTACGGGACTCCAACTGGAGCTTGTGGCTTTGGTGAGTATGGAAGGACGGTCCAAGGTGGCAGTGTCGCAGCCGTGGCTGGGCTATGGAAGGGTGGCAGTGGTTGTGGTGCATGTTATCAGGTTAGGTGCACAGATTCAAAATTGTGCAATCCCAATGGAGCGCACTTGGTGGTAACAGACTATGGTCAGGGAGACAGAACAGACTTCATCATGAGCCCAAACGCCTTCTCAAGTTTGGGACGCAACAAAGCTGCAAATGATCAATTGAAGAAACTAGGTGTAGTGGATATTGAATACCAAAGGGTCGCTTGCAAATACCCTGGTCGCAACATCGTGTTTAAGGTCCAAGATAGCAGCAGCAACCCTGGCTACTTTGCTGGTGTGCTTCTCAATGTTGGTGGAAAATGCGATATCATTTCTATTGAGCTGCAGCAGGGCAAGGGGTGGATACCCCTGCGCAGGTCCTATGGAGCAGTTTTTGACATAAGCAACCCACCAAGTGGTAAAATTGTATTGAGGTTCCAAGTGGATTGCGGTGCAGGGCTCAAATATGTGGTGGCCAAGAACCCCATCCCTAGCAACTGGAAGGCCGGAGCAACTTATGACACTGGGGTTCAGTTTTATTAG 744 0.4906 MEPKHQLGLVCVILLLPALCSASYAFTKSRASFYSTPDGYGTPTGACGFGEYGRTVQGGSVAAVAGLWKGGSGCGACYQVRCTDSKLCNPNGAHLVVTDYGQGDRTDFIMSPNAFSSLGRNKAANDQLKKLGVVDIEYQRVACKYPGRNIVFKVQDSSSNPGYFAGVLLNVGGKCDIISIELQQGKGWIPLRRSYGAVFDISNPPSGKIVLRFQVDCGAGLKYVVAKNPIPSNWKAGATYDTGVQFY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1317 247 Pfam Lytic transglycolase 62 138 IPR009009 -
Dod05g1317 247 Pfam Expansin C-terminal domain 150 231 IPR007117 -
Dod05g1317 247 Gene3D - 145 247 IPR036749 -
Dod05g1317 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Dod05g1317 247 PANTHER EXPANSIN-B1-LIKE PROTEIN 3 246 - -
Dod05g1317 247 SUPERFAMILY PHL pollen allergen 148 241 IPR036749 -
Dod05g1317 247 PANTHER EXPANSIN-B3 3 246 - -
Dod05g1317 247 SMART dpbb_1 60 138 IPR007112 -
Dod05g1317 247 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Dod05g1317 247 Gene3D - 18 144 IPR036908 -
Dod05g1317 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Dod05g1317 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Dod05g1317 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Dod05g1317 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Dod05g1317 247 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Dod05g1317 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 242 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1317 Dod-Chr5 36869182 36871736 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1317 1 244 Expansin Gene Family AT4G17030 46.988 3.11e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1317 - - gmx:100778424 324.324