Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1312 ATGGCAAACCCATCTTCCTCCTCTTCCTCCTCTTCCCAATACACCTACTCCTCCGACCCCTCTTTCTTCCCCACCCCCTTCCACCTGCAACAACCCCCCTACGCCCCACCCCCACGCCCCCCTCCTCCCTCTGCCACCGCCACCTCCGCCCCCTACACCTACCCTCCTCCGCCGCACCACCATCCCCACCACCAATTCCAGCGCGACGCGCAGCAACTCTTCCAGCGCGATGCCCAGACCATCACCCCAGAAGCCCTCGAGAGTGTTAAGGCCGCCATCGCCAGCAGCGACGTCGACCACAAGGCCGAGGCGAAGCGCAAGGCCCTCCCCCGCCGCGCCGCCGGCCAGACCTGGGAGGACCCCTCCCTCGCCGAATGGCCGGAGAACGACCACCGCCTCTTCTGCGGCGACCTCGGGAACGAGGTAAACGACGACGTTTTGTCCAAGGCCTTCTCTCGTTTCCCTTCGTTCAACATGGCTAGGGTCGTTAGGGACAAGCGCTCAGGGAAGACGAAGGGTTACGGTTTCGTGAGCTTCGCTGACCCTTTGGATCTGGCCGTTGCGCTCAAGGAGATGAATGGGAAGTACGTTGGTAACCGACCTATTAAGCTTTGCAAGAGCAAGTGGAAGGAGAGGACCGATTTCGACGCGATGGACAAGCAGAAGAAGCACTCTAAGAAGAAGCTGAAGTCCTCATCAAAGGTTGGCGTGTTGCATTACTGA 723 0.6058 MANPSSSSSSSSQYTYSSDPSFFPTPFHLQQPPYAPPPRPPPPSATATSAPYTYPPPPHHHPHHQFQRDAQQLFQRDAQTITPEALESVKAAIASSDVDHKAEAKRKALPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPLDLAVALKEMNGKYVGNRPIKLCKSKWKERTDFDAMDKQKKHSKKKLKSSSKVGVLHY* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1312 240 MobiDBLite consensus disorder prediction 1 25 - -
Dod05g1312 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Dod05g1312 240 SMART rrm1_1 132 205 IPR000504 GO:0003723
Dod05g1312 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Dod05g1312 240 SUPERFAMILY RNA-binding domain, RBD 115 211 IPR035979 GO:0003676
Dod05g1312 240 MobiDBLite consensus disorder prediction 93 123 - -
Dod05g1312 240 MobiDBLite consensus disorder prediction 216 240 - -
Dod05g1312 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 239 - -
Dod05g1312 240 MobiDBLite consensus disorder prediction 26 60 - -
Dod05g1312 240 MobiDBLite consensus disorder prediction 94 113 - -
Dod05g1312 240 PANTHER RNA-BINDING PROTEIN 42-LIKE 28 239 - -
Dod05g1312 240 MobiDBLite consensus disorder prediction 1 71 - -
Dod05g1312 240 CDD RRM_RBM42 125 207 IPR034215 -
Dod05g1312 240 Gene3D - 67 223 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1312 Dod-Chr5 36828789 36832394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1312 81 211 Eukaryotic Initiation Factors Gene Family AT1G71770 25.735 8.67e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1312 K25079 - adu:107484659 317.39