Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1279 ATGGCTTTCTCCCTTTTGTGCCCTCTGCTTGTAACCACCATGCTTCTCATGCGAACTCTGGCAGATACTTCATGCAGTGATTGTTTTGTTCAATCTCGAGCAGCACATTACCCAAACTCTGAAGTAAATGGCACAGATGTTGGTGCGTGTGGATTTGGTTCCTTTGGTGCTACTCTTAATGGTGGGGATGTATCTGCTGCATCCGATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGGTGTACCAACACTACCTACTGCTCCAGCAATGGTGTCACAGTAGTTATAACTGACCAAGGCTCAGGTGATAAAACTGACTTCATTCTTAGTCAACGAGCCTTTGGTGGGATGGCTCAGAACTCTAATGCAGCTGCTTTTCTATTAGCTCTTGGCACAGTTGATATTGAATACAGACGTGTTTCATGCAGCTACACAAACAAAAACATTACAATTAAGATAGATGAGAGCAGCAGTAACCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGGAGAGACATAACTGCTGTCCAGCTCTGCGAGACGCAGAACTTTGTCTGCAAGCTACTGGATCGGAGTCATGGGGCAGTCTGGACTACTACCTCTCCACCGAGTGGACCATTGTCTTTAAGGATGCTGTTTAGTGCCGAAGATGGAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCTGGAGACTGGAAGGCTGGAGAAACATATGACTCAGGGATACAAGTGGACAAATAG 765 0.4523 MAFSLLCPLLVTTMLLMRTLADTSCSDCFVQSRAAHYPNSEVNGTDVGACGFGSFGATLNGGDVSAASDLYRNGVGCGACYQVRCTNTTYCSSNGVTVVITDQGSGDKTDFILSQRAFGGMAQNSNAAAFLLALGTVDIEYRRVSCSYTNKNITIKIDESSSNPHYLAFVLWFQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSPPSGPLSLRMLFSAEDGEETWVVPVNNIPGDWKAGETYDSGIQVDK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1279 254 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Dod05g1279 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 8 253 - -
Dod05g1279 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Dod05g1279 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Dod05g1279 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Dod05g1279 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Dod05g1279 254 PANTHER EXPANSIN-B3 8 253 - -
Dod05g1279 254 Gene3D - 148 252 IPR036749 -
Dod05g1279 254 Gene3D - 17 147 IPR036908 -
Dod05g1279 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Dod05g1279 254 Pfam Lytic transglycolase 68 140 IPR009009 -
Dod05g1279 254 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Dod05g1279 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1279 Dod-Chr5 36178773 36181033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1279 5 250 Expansin Gene Family AT4G17030 43.320 1.55e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1279 - - gmx:100794009 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0893 02 11399941 11402150 Dod05g1279 05 36178773 36181033 PCT