Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1260 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCAAAGGGTCTCAAGGTTCTTCTCCTTGAGGGAGACAGCACTTGTGCTGATGAGATAAGAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTGTATTCTGCGATGAGAATGAAGCCTTGTCAGCAATTTCGAGTCGATCGGACGGGTTCCACATTGCCATAGTGGAGGTGAGTACAAGCAGTGGCGAAGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATTATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTTAGCAAACCACTTTCTGAGGACAAGCTTAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGTTCAAGTGTCCTGTCTGAATCGCTAAGACCTGTCAAAGAATCTGTAGTGTCAATGTTGCAGCTCCAAACAGACAATGCACCGGAAGAAAGCAGGTACACTGATGATGACCATGATCCCGGAAGTGATGAGTATCCGGCTCCATCGACCCCGCAATTGAATCAGGGAGCAAGATTACTGGATGATGGGGACTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGACAGTGGGGATCATGATGGAGAAGGAGAATCTAAATCTGTCGAAACTACATGCGGAAATTTGAATGCTGAAAGTAATCCCGAACCAATGAAATCTGAAAAGACCCCGGTTAAGGAGAGCGAGGATTTTGCGAAAGGTTCTGAAGGCGAGACACGTGATGGTTCTATATGTACACATCCATGCAATGGAAAGGTTCTCAGCAGCACTGATGGAAATACAAATTCTTCAAATAAAGGGGGCATTCTTAGCAATTCAACTGCGATAAAAGCTCATCGGAAGAAGATGAAAGTGGACTGGACACCTGAGTTGCACAAAAAATTTGTGAAAGCAGTAGAACAACTAAGCCTTGATCAAGCCATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGGATGCATAAGAGACAAATCTTGCCCAAGGAAGAAGATCGGAAATGGCTAAATCAAAGAGATCAAATGCAAAGGAACTACTGTATTCAAAGACCAATTATGGCCTTTCCACCATATCATTCTAATCACACCCTTTCTCCAGCTCCTCTATATCCTGTGTGGCAGCAAGCTGGCAGTCAAACGGCAGCTATGCAGGTTTGGGGCCCTCCTGGTTATCCCTTGTGGCAGCCTCCAGAAAGTTGGCACTGGAATCCACTTCCAGGGATGCATGCGGACGCATGGGGCTGCCCTGTGTTACCACCTCCTCAGGCTCCTAGTTGCTTTTCCAATCCACAAAATATGCCTGGATTGCATAATACTAATGCAGTGGACTACAAGTTTAGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGACGAGGTTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTAGGCCTCAAACCACCTTCCACAGACAGTGTCCTGACTGAACTCTCCAGGCAAGGCATATCCACCGTCCCTCCTCGGCATCAAGGGCACTAA 1644 0.4592 MVCTANDLQEWKDFPKGLKVLLLEGDSTCADEIRAKLEAMDYNVSVFCDENEALSAISSRSDGFHIAIVEVSTSSGEGGFKFLENAKDLPTIMTSNNYCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGSSVLSESLRPVKESVVSMLQLQTDNAPEESRYTDDDHDPGSDEYPAPSTPQLNQGARLLDDGDCQEQTNCSTEKDSGDHDGEGESKSVETTCGNLNAESNPEPMKSEKTPVKESEDFAKGSEGETRDGSICTHPCNGKVLSSTDGNTNSSNKGGILSNSTAIKAHRKKMKVDWTPELHKKFVKAVEQLSLDQAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRQILPKEEDRKWLNQRDQMQRNYCIQRPIMAFPPYHSNHTLSPAPLYPVWQQAGSQTAAMQVWGPPGYPLWQPPESWHWNPLPGMHADAWGCPVLPPPQAPSCFSNPQNMPGLHNTNAVDYKFSMPQSSFEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLTELSRQGISTVPPRHQGH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1260 547 SUPERFAMILY CheY-like 16 134 IPR011006 -
Dod05g1260 547 MobiDBLite consensus disorder prediction 244 262 - -
Dod05g1260 547 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Dod05g1260 547 MobiDBLite consensus disorder prediction 160 272 - -
Dod05g1260 547 MobiDBLite consensus disorder prediction 526 547 - -
Dod05g1260 547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 307 362 IPR006447 GO:0003677
Dod05g1260 547 Gene3D - 303 365 - -
Dod05g1260 547 SMART REC_2 18 128 IPR001789 GO:0000160
Dod05g1260 547 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Dod05g1260 547 MobiDBLite consensus disorder prediction 226 242 - -
Dod05g1260 547 MobiDBLite consensus disorder prediction 211 225 - -
Dod05g1260 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 304 363 IPR017930 -
Dod05g1260 547 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 538 IPR044825 GO:0003700|GO:0045893
Dod05g1260 547 MobiDBLite consensus disorder prediction 167 181 - -
Dod05g1260 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 538 - -
Dod05g1260 547 SUPERFAMILY Homeodomain-like 305 364 IPR009057 -
Dod05g1260 547 MobiDBLite consensus disorder prediction 525 547 - -
Dod05g1260 547 Gene3D - 18 140 - -
Dod05g1260 547 Pfam Myb-like DNA-binding domain 310 359 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1260 Dod-Chr5 35692985 35699025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1260 1 541 Response Regulator Gene Family AT4G18020 50.794 4.96e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod05g1260 Response_reg 1.5e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1260 - - gmx:100784905 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0885 02 11344139 11351444 Dod05g1260 05 35692985 35699025 PCT