Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1239 ATGGAAATTATCAACACTCACGTGGATTGGACAAAGAAGAGGAATGTTGCTGCCTTTGCTGCTGGTTTTAGGGCGAATCCCCAACAATTGCAGACTCTGGCTCAGGTGAAGGCCTTTTCCGGGAGTGGCACTGTGCCAAATTCGGATTCTCCGGCTGTAGCGGAAGTCCCTGGTGAGCAGCCTGCAGATTCTCAGAGTCTTGATAGCCAAGATGCTGTGAACTCGGTGCTGAGTAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGCTTGTGGCTGAAGACCAGAAGGAGGAGGTGATAGTCACTTTATTCCATCAGATTAAGGATCTTGAGAAACAGGTCAAGGAAAGAAAAGATTGGGCCCATCAGAAGGCAATGCAAGCGGCGAAGAAGCTTAGCGGTGATCTGACTGAGCTCAAAACATTGAGGATGGAAAGAGAGGAGACTCAGAGATTAAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGCGGCTCTCGGAGATGGAGAATGCTTTGAGGAAGGCTAGTGGTCAAGTGGACCGCGCGAATGCAGCTGTGAGGAGGCTGGAGACTGAGAATGCAGAGATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTCGCGAAAAGGGAGAAAAAATGCTTGAAGAAGCTTCTAGCTTGGGAGAAACAGAAAGCTAAGTTACAGCAGCAGATTTCTGATGAAAAAGCAAAGATATTGGAGACACAAGAATTATTGGTTCAGATTCGGCAAAGCGAAAAAGAAGCTGAGGTCAAGTGGAAGGAGGAGCTGAAGGCTAAAGAGGAAGCCATAGCACTAGTCGAGGAGGAGCGCCGTTCTAAGGAAACAACCGAGTCTAATAATAAGAGGAAGCTTGAGGCTTTACGCCTGAAGATCGAGATTGATTTCCAGCGGCACAAGGATGATGTACTAAGACTCGAGCAGGAGCTTTCGCGCCTTAAAGCATCTGCACAATCTGCTGAGTTGCACAATCAATCAAATACTTCGCCTGAAGGTGAGTCTGAGGGTCCAATGCCCCAAAGAGATACAATTGCTAAGCTGCTTCAAGAACTAGATAATCTGGAACATTATTCGGAGAAGGAAGTCAATGGCAACAGAGAGTGCATTGTATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTGCACACCAGGTTATGTGTGCTAGTTGCGGTGATGAGTATGGAAGAAAGGGAAAAGCTGCTTGTCCTTGCTGTCGGGTTCCAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 1329 0.4673 MEIINTHVDWTKKRNVAAFAAGFRANPQQLQTLAQVKAFSGSGTVPNSDSPAVAEVPGEQPADSQSLDSQDAVNSVLSKFRDLNLDENLELVAEDQKEEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAAKKLSGDLTELKTLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQQISDEKAKILETQELLVQIRQSEKEAEVKWKEELKAKEEAIALVEEERRSKETTESNNKRKLEALRLKIEIDFQRHKDDVLRLEQELSRLKASAQSAELHNQSNTSPEGESEGPMPQRDTIAKLLQELDNLEHYSEKEVNGNRECIVCMKDEVSIVFLPCAHQVMCASCGDEYGRKGKAACPCCRVPIQQRIRVFGASS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1239 442 Pfam Zinc finger, C3HC4 type (RING finger) 385 433 - -
Dod05g1239 442 SUPERFAMILY RING/U-box 376 434 - -
Dod05g1239 442 Coils Coil 168 209 - -
Dod05g1239 442 MobiDBLite consensus disorder prediction 335 354 - -
Dod05g1239 442 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 441 - -
Dod05g1239 442 PANTHER OS05G0141500 PROTEIN 9 441 IPR046934 -
Dod05g1239 442 Coils Coil 270 297 - -
Dod05g1239 442 MobiDBLite consensus disorder prediction 335 359 - -
Dod05g1239 442 Coils Coil 316 343 - -
Dod05g1239 442 ProSiteProfiles Zinc finger RING-type profile. 388 428 IPR001841 -
Dod05g1239 442 Coils Coil 231 258 - -
Dod05g1239 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 439 IPR013083 -
Dod05g1239 442 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1239 Dod-Chr5 35280205 35287149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1239 388 438 C3H Transcription Factor Family AT1G73950 41.176 5.25e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1239 - - adu:107483267 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0869 02 11179209 11182832 Dod05g1239 05 35280205 35287149 PCT