Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1235 ATGCCAGTTCCACTTGCCCCCTACCCGACACCACCAGCACCTTATACAACCCCAGCAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCCACATCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCCCCTGGCACAGAAATGGCGCAGTTAGTTTGCGGCGGCTGCCATACTTTACTCATGTACATCCGTGGAGCAACCAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGTAACTGCAGGATGTTACTCATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCATCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 438 0.4932 MPVPLAPYPTPPAPYTTPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1235 145 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Dod05g1235 145 PANTHER PROTEIN LOL1 1 142 - -
Dod05g1235 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Dod05g1235 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Dod05g1235 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Dod05g1235 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Dod05g1235 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Dod05g1235 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Dod05g1235 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1235 Dod-Chr5 35142337 35144962 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dod05g1235 zf-LSD1 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1235 - - qsu:112000975 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0868 02 11165516 11168349 Dod05g1235 05 35142337 35144962 PCT