Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1231 ATGGATTCCCGGGAACCGCCGCGTCCGCCGCCGTCGCACTCATCGGCGCCACCCATGATGGCGGGACCCACCTCCTACTCCTCCCCCGCCATCGTCGCCCCCAACCCAGCCGCCGTCATCGCCCCCGCCACCGCTCGATTCCCCTTCGGCTCCCCTCCGCCGACGTCCAACCCTTCCGAGCCCTTCAATGGAGGCGCCGGCGGCCCCTACGACGGCTCCTCGTCGGCGATGAAGCCGTGCTCCGCCGGCGACGGGCTTGCCAAGAAGAAGAGAGGCCGGCCGAGGAAGTACTCGCCGGACGGTAACATTGCCCTGGGGCTGGCCCCTACGCACCCGTCCCCTTCCGCCGCCGGACACGGCGGCGGTGGTGGTGGCGGAGAATCGGGAGGGACGCCGTCCGCGGAGGCTTCGGCGAAGAAGCACAGGGGAAGGCCTCCAGGTTCTGGAAAGAAACAGTTAGATGCGCTCGGTGCTGGTGGGATTGGATTCACTCCGCACGTGATCTTGGTGGATGCTGGAGAGGACATTACAGCAAAAATTATGGCCTTTTCTCAGCAAGGTCCTCGAACAGTTTGTATTCTTTCTGCTAATGGTGCAATCTGCAATGTCACCCTGCGACAACCAGCATTGTCTGGTGGTACTGCAACATATGAGGGCCGATTTGAGATTATATCTTTATCAGGTTCTTTGCAGCTCTCTGAAAATAATGGTGAACGTAGCAGAACATGTGGTTTGAGTGTGTCCCTTGCAGGGTCTGATGGGCGGGTTTTGGGTGGCGGAGTTGCTGGAATGTTAACTGCAGCATCACCTGTACAGGTCATTGTTGGTAGCTTTATTGCAAATGGCAAAAAGTCAAGACCGAATGTCCTAAAATGTGGACCTTCTTCAGCTCCAACGTCCCAAATGTTAGCATTTGGTGGACCAATGACTCCAACTAGTCCTACCTCTCAAGGGCCTTCATCTGAGTCCTCTGAGGACAACGATCATAGTCCCTTTAATAGGGGGCCCGGGCTTTACAATAATGCTAGTCAGCCCGTTCATAATATGCAGATGTACCATCAGCCACTTTGGGCTGGCCAAACTCATCAGTGA 1092 0.5687 MDSREPPRPPPSHSSAPPMMAGPTSYSSPAIVAPNPAAVIAPATARFPFGSPPPTSNPSEPFNGGAGGPYDGSSSAMKPCSAGDGLAKKKRGRPRKYSPDGNIALGLAPTHPSPSAAGHGGGGGGGESGGTPSAEASAKKHRGRPPGSGKKQLDALGAGGIGFTPHVILVDAGEDITAKIMAFSQQGPRTVCILSANGAICNVTLRQPALSGGTATYEGRFEIISLSGSLQLSENNGERSRTCGLSVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIANGKKSRPNVLKCGPSSAPTSQMLAFGGPMTPTSPTSQGPSSESSEDNDHSPFNRGPGLYNNASQPVHNMQMYHQPLWAGQTHQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1231 363 MobiDBLite consensus disorder prediction 45 154 - -
Dod05g1231 363 Gene3D - 165 290 - -
Dod05g1231 363 MobiDBLite consensus disorder prediction 292 344 - -
Dod05g1231 363 MobiDBLite consensus disorder prediction 292 326 - -
Dod05g1231 363 MobiDBLite consensus disorder prediction 1 31 - -
Dod05g1231 363 ProSiteProfiles PPC domain profile profile. 159 299 IPR005175 -
Dod05g1231 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 71 358 - -
Dod05g1231 363 CDD DUF296 164 278 IPR005175 -
Dod05g1231 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 358 IPR039605 GO:0003680
Dod05g1231 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 280 - -
Dod05g1231 363 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Dod05g1231 363 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Dod05g1231 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1231 Dod-Chr5 35062647 35073447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1231 87 342 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 57.090 3.29e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1231 - - var:108323770 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0866 02 11137729 11141771 Dod05g1231 05 35062647 35073447 PCT