Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1221 ATGGAGAAATTAAACACTCCAACGGACGGATCTGCGGCCAGCTGGTTGTCTGACTTGGTCATGGAAGAATACAATTTCTCTCCCGAGGAATGCCAACTCAACTTGCTTGATTATGATGAAGAGGAGTTTATTTCAGGTGACATAGCGAGTACCCTCAGGGAAAGACCCTACAAAAGCAATCTTTATCTTCGGAGTGCACTTCCAAAACTGCTCAGCAACTCTTGCAGTTTTGAGAGGCCTGCCAAGCTGCTCAAGGAGAGTAGCAATATTCCGAACTCATCCAGTACTACTGAAAACAACTTTTCACCAAATTTTTCCTTCTCATCTTCCATCTTATCCATTCAGTCTCAGATTCTGTCCTTTGACAACTCAAACTCATCTCCTACCACACAGTTATATGTTCAAACTCCAAACAGATCCTCAAGGACTCAAAACCTGGCAACAAAAACCACACATTGTAAGAAGTCACTAGCTAACGCTCAGGATCACGTCATGGCCGAGCGAAAGCGAAGGGAGAAGCTTAACCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTATTAGAGGACGCTGTCAAATACGTGAAAGAGCTCAAAGATCGTGTGGAAGTGCTCGAAGAAGAGAGCAAGAAAACAAAGTCAGGGTCTGCGGTGGTTCTGAACAAACCAGAGCTCTGTGGCGCTGGAGATTCCTCCTCCTCATGCGATGAGAGCACTGACGCTAGCAGTAGCAGCGTCTTGCCATTTGGGGATTCTATTCTTGAGATAACCATCATTGCCCAGATGGGCAATGGTTACAACTTGACCCTAGAGGAACTCGTCAATAACCTACGCGTCGCTGCATTGAAGTTCACGTCATAA 888 0.4583 MEKLNTPTDGSAASWLSDLVMEEYNFSPEECQLNLLDYDEEEFISGDIASTLRERPYKSNLYLRSALPKLLSNSCSFERPAKLLKESSNIPNSSSTTENNFSPNFSFSSSILSIQSQILSFDNSNSSPTTQLYVQTPNRSSRTQNLATKTTHCKKSLANAQDHVMAERKRREKLNQSFIALAALVPGLKKMDKASVLEDAVKYVKELKDRVEVLEEESKKTKSGSAVVLNKPELCGAGDSSSSCDESTDASSSSVLPFGDSILEITIIAQMGNGYNLTLEELVNNLRVAALKFTS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1221 295 PANTHER BHLH TRANSCRIPTION FACTOR 252 294 - -
Dod05g1221 295 Gene3D - 149 223 IPR036638 GO:0046983
Dod05g1221 295 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 252 294 - -
Dod05g1221 295 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 253 - -
Dod05g1221 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Dod05g1221 295 Coils Coil 197 224 - -
Dod05g1221 295 PANTHER BHLH TRANSCRIPTION FACTOR 7 253 - -
Dod05g1221 295 SMART finulus 164 213 IPR011598 GO:0046983
Dod05g1221 295 Coils Coil 157 177 - -
Dod05g1221 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Dod05g1221 295 Pfam Helix-loop-helix DNA-binding domain 162 207 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1221 Dod-Chr5 34766888 34770580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1221 79 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.296 5.89e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1221 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1221 - - gmx:100788128 282.337