Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1220 ATGATGCAAATCTCGTCCACCAAGTACCTGCCTGAACCTGGAATGGAGGACTCCGCTTTCTTCCATCAATACCCAATTGATTCACTCACATGGCCCCTTGATGATTTTGAACTCCAATCCTTTTCTGCATCCCCAAAGGGCCATTCCTCTAACAAGCGCTTCAACTCCGGAACCACACAGATGATGAACTCCTTCCCCATGGAAAGACCAACCAAGCAGCACAAGACCACTACAACTACCTGGAATGCTTACGGTAGTGGTAGTGACTTCGTGGCTCCAAAAGCTTCTTCCTCTTCATCCTCTCAACTCATTTCCTTTGAGCACTCCAATGCATCTTCAGTTGCTTCCCATCAGCAAATTTACAACCCGGATCAGGCCAATAATAATAATATTGTGAAGCCTAAAGCGGAGAGTGGGTGCATTTCTCATCAAGGCGACTATGAGGCCAAAAGCTTCCTAAGCTATGATAAAACGAACAAGGGTGGTGCCACGGCTGCTTCGACCAGAAACCCAACTCAGGCTCAAGATCACGTGATAGCCGAGAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATTGCACTTTCGGCCATAGTTCCAGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAATATCTGAAGCAGCTGCAGGAACAGGTAAAGACTCTGGAGGATCAAGTGGCCCAGAAAACCGTTGAATCGGCAGTTTTTGTGAAGAGATCTATTCTCTTCGCCGAAGATGATGGCTCCTCTTCCGACGAAAACTCGGACCAATCGATCCCCGAGATCGAAGCAAGAGTTTCTGGTAAGGACGTGCTCGTCAGAATCCACTGCGACAAACACAGTGGACGACCAGCTACAATACTCAGCGAGTTAGAGAAGCATAACCTCACTGTTCAGAGTAGCAGCTTTTTGCCCTTTGGGAATAACAGTCTCGACATAACTATTATTGCTCAGATGAACAAGGAATGTTGCGTGACAGCAAAGGATCTCATAAGGAGCTTGAGTCAAGCTTTGAGGCAGTTCATTTGA 1047 0.4718 MMQISSTKYLPEPGMEDSAFFHQYPIDSLTWPLDDFELQSFSASPKGHSSNKRFNSGTTQMMNSFPMERPTKQHKTTTTTWNAYGSGSDFVAPKASSSSSSQLISFEHSNASSVASHQQIYNPDQANNNNIVKPKAESGCISHQGDYEAKSFLSYDKTNKGGATAASTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEQVKTLEDQVAQKTVESAVFVKRSILFAEDDGSSSDENSDQSIPEIEARVSGKDVLVRIHCDKHSGRPATILSELEKHNLTVQSSSFLPFGNNSLDITIIAQMNKECCVTAKDLIRSLSQALRQFI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1220 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Dod05g1220 348 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Dod05g1220 348 Gene3D - 164 236 IPR036638 GO:0046983
Dod05g1220 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 240 IPR036638 GO:0046983
Dod05g1220 348 CDD bHLH_AtNAI1_like 174 246 - -
Dod05g1220 348 Coils Coil 211 238 - -
Dod05g1220 348 SMART finulus 178 227 IPR011598 GO:0046983
Dod05g1220 348 PANTHER BHLH TRANSCRIPTION FACTOR 1 347 - -
Dod05g1220 348 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1220 Dod-Chr5 34738330 34740892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1220 2 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.440 1.84e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1220 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1220 - - adu:107482661 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0855 02 10961074 10963903 Dod05g1220 05 34738330 34740892 PCT