Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1214 ATGACTTCAGCGGAGAAATCGTGGAGAAGTTGGTTGCGTGACATGGATCAAGATGATTTCAGTTTCATCCGTCAATCAGCTATGTTACCCGACGCTGAAAACACCAACACCGTGATAAACTCTTCAGTGGCCGAGTGTAACTTAGATTCGCCTTCCAAGTCACCCAAGATTTGCAGCACTCCAAAGTCTACCAAGACCGAGGAGGAACCCTCACAACTAAAACCAGCTTCTTGTTCTCCTCGCTCCTTCATTCTTTCGTTCGACAATAACGCGAATCCACCACCACTGAAGGTTGAATCTGCCTTGAAGCCAAAAACCAAAGTTTTGCATCATGGGAAATCCTTGCTTTTCTCGAAGAATGAACAGGAGGGAAAGCAGACCGAGTCAGTGACCAGAGCACCTCATCACGCTCATGATCACACAATTGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTTTCTGCTCTTATTCCAGACCTGAAAAAGATGGATAAGGCCTCGGTGTTAGGGGATGCTATAAAGCATGTGAAACAGCTGCAAGAGCGAGTGAGACTGCTGGAGGAACAGAGCAAAAAGAAAGGCGTGGAATCCGTGGTGTACGTGAAGAAAGCTCCGTTCTCGGGGGACGAAGATGTCTCAGACGACACCTCGACAAATTCCTGTGACGGAAACTCCGATGATTCGTCCATGACAAAGCTGTCACTGCCAGAGGTTGAAGCAAGGGTGTCCGACAAGAGCGTGCTGATCCGGATCCACTGCCAGAAACAAAATGCAGTGTTGGCGAACATCATTAAAGAGATCGAGAAACTTCACCTCTCCGTGACCAACAGCAGTGCCTTGATTTTTGGGTCCTCAGTTCTGCTCATAACCATCGTAGCCGAGATGGAAAATGAGTTCAACATGAACGTGACGGAACTGGCAAGAAAGCTCAAAGTGGGACTGTTGCAATTTATGTAG 972 0.4753 MTSAEKSWRSWLRDMDQDDFSFIRQSAMLPDAENTNTVINSSVAECNLDSPSKSPKICSTPKSTKTEEEPSQLKPASCSPRSFILSFDNNANPPPLKVESALKPKTKVLHHGKSLLFSKNEQEGKQTESVTRAPHHAHDHTIAERKRREKISQQFIALSALIPDLKKMDKASVLGDAIKHVKQLQERVRLLEEQSKKKGVESVVYVKKAPFSGDEDVSDDTSTNSCDGNSDDSSMTKLSLPEVEARVSDKSVLIRIHCQKQNAVLANIIKEIEKLHLSVTNSSALIFGSSVLLITIVAEMENEFNMNVTELARKLKVGLLQFM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1214 323 MobiDBLite consensus disorder prediction 125 144 - -
Dod05g1214 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Dod05g1214 323 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 323 - -
Dod05g1214 323 MobiDBLite consensus disorder prediction 216 236 - -
Dod05g1214 323 Coils Coil 174 201 - -
Dod05g1214 323 MobiDBLite consensus disorder prediction 213 236 - -
Dod05g1214 323 CDD bHLH_AtNAI1_like 135 208 - -
Dod05g1214 323 MobiDBLite consensus disorder prediction 120 144 - -
Dod05g1214 323 MobiDBLite consensus disorder prediction 46 77 - -
Dod05g1214 323 Gene3D - 135 204 IPR036638 GO:0046983
Dod05g1214 323 Pfam Helix-loop-helix DNA-binding domain 140 185 IPR011598 GO:0046983
Dod05g1214 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 197 IPR036638 GO:0046983
Dod05g1214 323 PANTHER BHLH TRANSCRIPTION FACTOR 5 323 - -
Dod05g1214 323 SMART finulus 141 190 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1214 Dod-Chr5 34572138 34574903 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1214 53 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.681 6.70e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1214 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1214 - - gmx:100803386 331.257