Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1209 ATGGGTCTTCATCATCAGGATGCTAGTGACAACTCAGGCCTTCAGCTTGTTCTAGGGCTAGCTTTGACTGGTTCTCCTGAAGAAACCATCACCTCCACAGCAACTACTACTACTACTCCATCACCATCCAACAAGGTTGTTGATGATCATCTTACTCTTAGTGTAACGCCAAGGAACTGTGATGTTGAGCCATCACTAACTTTGGGTCTGTGCGGTGGTGAGAGTAATAATAATAATTATTATATGCAGCAGCATGTGGTCAAAGTCCAAGTCCCGATATCCAAGATGGATAATATGGGACACAACATGATGAATAGGGTTTACAGGGAGGAACCTCTTGAATTGTCTGCGCAGACTTCGCCTCACAGCGTTGTCTCCTCCTTCTCCACTGGGAGGGTGAAGAGGGAGAGGGACCTTAGCAGTGAAGAAACGGAGGCTGCGGAGATAGAGAGGGTTTCCTCAAGAGTCAGCGACGAAGACGAAGACGGCACCACCGCCAGGAAGAAGCTCAGGCTCACCAAAGACCAATCTGCTCTGCTTGAAGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGGCAGTTAAATCTACTGCCTCGGCAGGTTGAAGTATGGTTCCAGAACCGGAGAGCCAGAACAAAGCTTAAGCAAACGGAGGTGGACTGTGAGTTCCTAAAGAAGTGTTGTGAGACGTTGACGGATGAGAACAGGAGGCTACAGAAGGAGCTGCAAGAGCTCAAGGCACTGAAACTAGCTCAGCCTTTGTACATGCCTATGCCTGCTGCCACACTCACCATGTGCCCTTCTTGTGAGAGGCTCGGTGGCGTTAGCGCTGGCGCTTCCAATAAGAGCCCTTTCTCCTTGGGCCCCAAGACTCACTTCTACAACCCCTTCACCAATCCTTCCGCAGCATGTTGA 939 0.4952 MGLHHQDASDNSGLQLVLGLALTGSPEETITSTATTTTTPSPSNKVVDDHLTLSVTPRNCDVEPSLTLGLCGGESNNNNYYMQQHVVKVQVPISKMDNMGHNMMNRVYREEPLELSAQTSPHSVVSSFSTGRVKRERDLSSEETEAAEIERVSSRVSDEDEDGTTARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSAGASNKSPFSLGPKTHFYNPFTNPSAAC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1209 312 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Dod05g1209 312 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Dod05g1209 312 MobiDBLite consensus disorder prediction 118 167 - -
Dod05g1209 312 PANTHER - 45 312 - -
Dod05g1209 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 45 312 - -
Dod05g1209 312 SMART HOX_1 165 227 IPR001356 GO:0003677
Dod05g1209 312 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Dod05g1209 312 SUPERFAMILY Homeodomain-like 157 224 IPR009057 -
Dod05g1209 312 MobiDBLite consensus disorder prediction 131 167 - -
Dod05g1209 312 Coils Coil 229 259 - -
Dod05g1209 312 CDD homeodomain 167 224 IPR001356 GO:0003677
Dod05g1209 312 Gene3D - 160 228 - -
Dod05g1209 312 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Dod05g1209 312 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1209 Dod-Chr5 34385719 34387132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1209 1 312 Homeobox Transcription Factor Family AT4G37790 55.828 1.50e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod05g1209 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1209 K09338 - gmx:100795135 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0834 02 10759440 10761143 Dod05g1209 05 34385719 34387132 PCT