Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1182 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCACTGAAAGCTGGAGTAGTCAAACATGGCGCAGGAAAATGGCGCACCATACTTACAGATCCAGAGTTCAGTAACATTTTGCGCATGCGGTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCGATATGGGGATCCCGGCAGAAAGCGAAGCTTGCCCTTAAAAGGAATCTACCAGCCCCACAAATTGAGAATAATCGTATGGCCTTGAGTACAGTAGTTCGACATGAAGAAGTTCTTGATACTAAGCCTCTCGCAGTTTCTGGTCCATCGTTGCCGTTTCCTAAGTTAAAAGAACAAATATCAAGGTTGGATAATCATATATTAGAGGCTATTATCAGTCTGAAGGAGCCGAGGGGTGCTGACAGGACTGCCATTGCTTCCTACATAGAGGAGAAATACCAGTCTCAACCAAACCTTGGAAAGTTACTGTCAACAAGATTGAAGCATATGGTGGCTAATGGCAAAATAATCAAGGTACAGCAGAAGTACAAGATTGCGCCAAGTACAGCAGGCTCTTTGAAAAGAAGATCCTCTTCCTTGTTACTCCTGGAAGGGAGGCAGAAGGATTCTCCAGAAGCTGAGAAGAGTGAAGATGTCAACATCCTTTCCAGATCCCAAGTTGATGCAGAGATATTGAAAGCGAAGGGCATGACAGCTCAAGAGGCAGCTGCGGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCGAGGGAGGCAGAGGCTGCAGAAGCTGAGGCGGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAGGGCACTAAAATGCAAAACATTTCATATCTGGTAG 888 0.4651 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSNILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPQIENNRMALSTVVRHEEVLDTKPLAVSGPSLPFPKLKEQISRLDNHILEAIISLKEPRGADRTAIASYIEEKYQSQPNLGKLLSTRLKHMVANGKIIKVQQKYKIAPSTAGSLKRRSSSLLLLEGRQKDSPEAEKSEDVNILSRSQVDAEILKAKGMTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMRALKCKTFHIW* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1182 295 Gene3D - 114 215 IPR036388 -
Dod05g1182 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod05g1182 295 CDD SANT_TRF 6 57 - -
Dod05g1182 295 SUPERFAMILY "Winged helix" DNA-binding domain 119 193 IPR036390 -
Dod05g1182 295 SMART sant 4 59 IPR001005 -
Dod05g1182 295 PANTHER MYB TRANSCRIPTION FACTOR 1 294 - -
Dod05g1182 295 Coils Coil 242 279 - -
Dod05g1182 295 Pfam linker histone H1 and H5 family 125 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod05g1182 295 Gene3D - 2 59 - -
Dod05g1182 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dod05g1182 295 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Dod05g1182 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dod05g1182 295 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Dod05g1182 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Dod05g1182 295 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1182 Dod-Chr5 33414461 33431850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1182 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 54.515 1.05e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod05g1182 Linker_histone 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1182 K09422 - gmx:100779583 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0811 02 10482602 10487484 Dod05g1182 05 33414461 33431850 PCT