Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1165 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATCTTGCGCCCTTGTTTGCAGTGGATCGACACCCCCGAGGCACAAGGCCACGCCACCGTTTTCGTAGCCAAATTCTTCGGCCGTGCCGGTCTCATGTCTTTCATTTCCAACGTACCGGAAACCCAAAGACCCGCTCTGTTCCAGTCTCTGCTATTCGAAGCGTGTGGGAGAACGGTGAATCCGGTTAACGGCGCCGTGGGGCTGTTGTGGACCGGGAACTGGCACGTGTGCCAGGCGGCGGTGGAGACGGTGCTCCGTGGCGGCGCGTTGGGGCCCATGCCGGAACTAATGGGACTCGACACCGCTGCTCCGGCCACCGACGAGGCGTCGGAGGCGGAGGTCACGTGCGCGGACGTTTCGAAGGTCCGAGATCCGAACCCGAATTGTCGGTTCACGAGCTCGCGATCTAACCGTGTAGCCGCCGCCGGCGGTGGTGGGAAGCGCAAGCGGCCGGAGGGGCGGGCGAAGCTGCAGACGGCGGCGACCGATCTTGACCTCCGGCTGACGCCGATCTTCCTGCAGAAGGTTTCCGACAACCGGAGCATGCCGGTGAATCGCCGACCGGGATCGCTGTCGATGACGTCGGAGGAGTCCATCACGACGACTGCGTGCTTGGAAAGTGGGATCGGCGGAGATCAGTGGGGCCACGTCGGAGACCGGAAAGTTCTCAATCTTTTTATTTGA 735 0.6204 MSCNGCRVLRKGCSETCILRPCLQWIDTPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGALGPMPELMGLDTAAPATDEASEAEVTCADVSKVRDPNPNCRFTSSRSNRVAAAGGGGKRKRPEGRAKLQTAATDLDLRLTPIFLQKVSDNRSMPVNRRPGSLSMTSEESITTTACLESGIGGDQWGHVGDRKVLNLFI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1165 244 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Dod05g1165 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 244 - -
Dod05g1165 244 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Dod05g1165 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1165 Dod-Chr5 32803226 32804990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1165 1 244 AS2 family AT4G37540 57.661 4.60e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g1165 LOB 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1165 - - gmx:100802764 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0782 02 10160588 10161375 Dod05g1165 05 32803226 32804990 ECH
Dod08g2014 08 47363931 47366028 Dod05g1165 05 32803226 32804990 ECH
Dod05g1165 05 32803226 32804990 Dod05g1165 05 32803226 32804990 ECH
Dod05g1165 05 32803226 32804990 Dod02g0782 02 10160588 10161375 PCT