Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1130 ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCGATTTCTCAAGTGGTTGCCAATGCAAACGAGAAGAAGCGGAATTTCACGGAGACCATTGAGCTGCAGATTGGGCTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTCCCTCACATTCCTCGCCCTAAGATGAAGATCTGCATGCTTGGCGATGCTCAACACGTCGAAGAGGCAGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCGCTGAAAAAGCTTAACAAGAACAAGAAACTTGTGAAGAAGCTGGCCAAGAAGTACCATGCTTTTCTGGCTTCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTTTGAACAAGGCAGGCAAGAATCTCTGGAGTCAAAAGTCCAATGAAACCAAAGCAATGGTGAAGTTTCAACTGAAGAAAGTTCTTTGTATGGGTGTTGCTGTTGGAAATTGCACAATGGAAGAGAAACAGATATTTCAAAACGTACAACTCAGTGTTAATTTCCTTGTTTCATTACTGAAGAAAAACTGGCAGAATGTGAGGTGCTTATACCTGAAGAGTACTATGGGAAGTGCGATCCGTGTATTTTAG 627 0.4386 MSKLQSDALREAISQVVANANEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKNLWSQKSNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1130 208 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 208 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Dod05g1130 208 Pfam Ribosomal protein L1p/L10e family 23 202 IPR028364 -
Dod05g1130 208 SUPERFAMILY Ribosomal protein L1 3 208 IPR023674 -
Dod05g1130 208 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 206 - -
Dod05g1130 208 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 206 - -
Dod05g1130 208 CDD Ribosomal_L1 9 207 IPR028364 -
Dod05g1130 208 Gene3D - 127 206 - -
Dod05g1130 208 Gene3D - 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1130 Dod-Chr5 31613288 31616144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1130 1 208 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 82.870 1.63e-114 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1130 K02865 - gmx:100527763 357.836