Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1126 ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCGATTTCTCAAGTGGTTGCCAATGCAAACGAGAAGAAGCGGAATTTCACGGAGACCATTGAGCTGCAGATTGGGCTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTCCCTCACATTCCTCGCCCTAAGATGAAGATCTGCATGCTTGGCGATGCTCAACACGTCGAAGAGGCAGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCGCTGAAAAAGCTTAACAAGAACAAGAAACTTGTGAAGAAGCTGGCCAAGAAGTATCATGCTTTTCTGGCTTCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTTTGAACAAGGCAGGTAAGTTTCCAACATTGGTGACACATCAGGAATCTCTGGAGTCAAAAGTCAATGAAACCAAAGCAATGGTGAAGTTTCAACTGAAGAAAGTTCTTTGTATGGGTGTTGCTGTTGGAAATTGCACAATGGAAGAGAAACAGATATTCCAAAACGTACAACTCAGTGTTAATTTCCTTGTTTCATTACTGAAGAAAAACTGGCAAAATGTGAGGTGCTTATACCTGAAGAGTACTATGGGAATTTTTCTTTTTATCGCTTTTGATAGCTCACTAGGTGGACTTGCCTGTTAA 681 0.4288 MSKLQSDALREAISQVVANANEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGIFLFIAFDSSLGGLAC* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1126 226 CDD Ribosomal_L1 9 210 IPR028364 -
Dod05g1126 226 SUPERFAMILY Ribosomal protein L1 3 215 IPR023674 -
Dod05g1126 226 Gene3D - 19 210 - -
Dod05g1126 226 Pfam Ribosomal protein L1p/L10e family 23 211 IPR028364 -
Dod05g1126 226 Gene3D - 65 154 IPR016095 -
Dod05g1126 226 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 210 - -
Dod05g1126 226 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 210 - -
Dod05g1126 226 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Dod05g1126 226 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 218 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1126 Dod-Chr5 31535603 31540967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1126 1 210 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.524 1.27e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1126 K02865 - gmx:100527763 384.03