Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1113 ATGATGTTAACTGGTGATCATGAGTCTAGTGCGAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCCGAAGATAAGCTGAGTCATGTAAAGGACACCTCAAGAGATACAGGGGGTGGCTTGATTATGGTTGGTGAAGGTATCAATGATGCTCCAGCACTTGCCGCTGCAACTGTAGGGATTGTGCTTGCTCATCGTGCTAGTGGAACTGCTATAGCTGTTGCAGATGTGTTGTTGCTACGAGAAAATATTTCCGCAGTGCCGTTTTGTATTGCCAAGTCTCGCCAAACAACCTCACTGATTAAACAAAGTGTGGCTCTGGCATTGTCCTGCATCGTCATGGCTTCTCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGTGCGTTAAATGAACCATCTTGGTCCTGGAAGCAGGATATATTACATTTGATTGACGAGGTTAAATCTAGACTACTGTCTCCCAGGACAAATATCACCGGCTCAAACAGCATTACAACCGCGAATTTGTAA 585 0.4479 MMLTGDHESSARRVASAVGINEFYCNLKPEDKLSHVKDTSRDTGGGLIMVGEGINDAPALAAATVGIVLAHRASGTAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQSVALALSCIVMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDILHLIDEVKSRLLSPRTNITGSNSITTANL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1113 194 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 1 180 - -
Dod05g1113 194 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1 130 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod05g1113 194 Pfam haloacid dehalogenase-like hydrolase 2 63 - -
Dod05g1113 194 PRINTS H+-transporting ATPase (proton pump) signature 50 66 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod05g1113 194 PRINTS H+-transporting ATPase (proton pump) signature 21 37 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod05g1113 194 PRINTS H+-transporting ATPase (proton pump) signature 82 107 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod05g1113 194 PRINTS P-type cation-transporting ATPase superfamily signature 74 86 - -
Dod05g1113 194 PRINTS P-type cation-transporting ATPase superfamily signature 50 69 - -
Dod05g1113 194 SUPERFAMILY HAD-like 2 150 IPR036412 -
Dod05g1113 194 Gene3D - 1 119 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1113 Dod-Chr5 31269381 31271250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1113 1 175 Primary Pumps ATPases AT4G37270 80.000 1.46e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1113 K01534 - gmx:547503 348.977