Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1080 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGCTCTTCCCTCAACGGGGACGATGATAATAAAGGCAAGAGGGTCGGATCTGTCTCCAATTCAAGCTCTTCCGCGGTGGTCATCGTGGACGGATCAGAAGAAGAGGAAGAAGAAGAAGAAGAAGACGAAGGAGAGAGAGAAGGTAGCAGAACCATGACGATGAAGAAGAGAAGCAGCAAGATATTTGGGTTCTCCGTGACCCACAACGATGATGATGAGTCCATGGACAGTGAGCACCCTCCGGTGACTCGGCAGTTTTTTCCGGTGGAAGAGGCTGATATGGCCGCCGCATCATCGTGTCGTGCCGGCGGTGGCGTCACCTCTGCCTTCCCTCGTGCTCACTGGGTTGGTGTGAAATTTTGTCCGTCAGAAGCACTTGGTTCTGGAAAATCATCAGTGGAAGTCTCTCAGCCCATGAAGAAGAGCCGCCGTGGACCGAGGTCCAGGAGCTCACAGTATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATTTGGGATTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGAGGGGTAGAGGCAGACATAAATTTCAACATAGAAGATTATGAAGAGGACTTGAAGCAGATGAGCAATCTGACCAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGTTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGACACCGAGGTTGAAGCTGCAAGGGCATATGATAAAGCAGCGATAAAATGCAACGGCAAAGAGGCTGTAACCAATTTTGATCCCAGCATCTACGATAACGAGCTAAATTCTGCAGAATCGAGAGGCAACGCTGCAGATCACAATCTGGATTTAAGTTTGGGCAATTCGAGCTCCAAGCCTAGCAATAGTCAAGCATTGGGAAATCACGCCCCAAATGTCGTAACTCACGATCACCCCGTGCCATCTGAATGGCGGAATGGAGGAAGCAAGCCTAAGCTGGTGAATATACTGCCCAAACCATGCAATGGAAGGGATGTGCACGGGGAGAGTGAAGCCTTGAGGATGTTAAGTCAAACTCACCTCCATTCTTCAGCCTCAAATGAAATGCAGAGATATGGTCCCTACAGGTCTCCAGGAGAGTCTCATTTGTTTCACAATTATGCACACCTTCAACCACCAAATTTTCATTTTCCTAGCAGCAGCAGTGGAGGTCGCATTGGAAGCGATCTTTCATTATCAATGGCCGATCAACAACAGTGGCAATCCGGGCCGCCTCCACATTACTTGGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCCCCATCTCACGAGACCCTCCTGA 1545 0.4906 MWDLNDSPDQRKDEESEGCSSLNGDDDNKGKRVGSVSNSSSSAVVIVDGSEEEEEEEEEDEGEREGSRTMTMKKRSSKIFGFSVTHNDDDESMDSEHPPVTRQFFPVEEADMAAASSCRAGGGVTSAFPRAHWVGVKFCPSEALGSGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSAESRGNAADHNLDLSLGNSSSKPSNSQALGNHAPNVVTHDHPVPSEWRNGGSKPKLVNILPKPCNGRDVHGESEALRMLSQTHLHSSASNEMQRYGPYRSPGESHLFHNYAHLQPPNFHFPSSSSGGRIGSDLSLSMADQQQWQSGPPPHYLATAAASSGFPPQIRPSSQGWLQKNGFPHLTRPS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1080 514 ProSiteProfiles AP2/ERF domain profile. 170 226 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 MobiDBLite consensus disorder prediction 1 74 - -
Dod05g1080 514 SUPERFAMILY DNA-binding domain 261 321 IPR016177 GO:0003677
Dod05g1080 514 MobiDBLite consensus disorder prediction 144 170 - -
Dod05g1080 514 PRINTS Ethylene responsive element binding protein signature 301 321 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 510 - -
Dod05g1080 514 ProSiteProfiles AP2/ERF domain profile. 262 319 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Dod05g1080 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 510 - -
Dod05g1080 514 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 Pfam AP2 domain 261 310 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 SMART rav1_2 170 232 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 SMART rav1_2 262 325 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 MobiDBLite consensus disorder prediction 48 63 - -
Dod05g1080 514 MobiDBLite consensus disorder prediction 490 505 - -
Dod05g1080 514 MobiDBLite consensus disorder prediction 331 362 - -
Dod05g1080 514 CDD AP2 170 227 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 MobiDBLite consensus disorder prediction 1 32 - -
Dod05g1080 514 CDD AP2 261 321 IPR001471 GO:0003700|GO:0006355
Dod05g1080 514 MobiDBLite consensus disorder prediction 331 383 - -
Dod05g1080 514 Gene3D AP2/ERF domain 169 228 IPR036955 GO:0003700|GO:0006355
Dod05g1080 514 Gene3D AP2/ERF domain 261 320 IPR036955 GO:0003700|GO:0006355
Dod05g1080 514 MobiDBLite consensus disorder prediction 483 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1080 Dod-Chr5 29846251 29850991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1080 1 358 AP2-EREBP Transcription Factor Family AT4G36920 66.667 3.29e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod05g1080 AP2 8.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1080 K09284 - gmx:100794096 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0728 02 9447717 9451202 Dod05g1080 05 29846251 29850991 PCT