Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1058 ATGGAGGTGGACACAGTAAAAACTTCGGCCTGTGACACCAGCAGCATGGACACGATGGCAGTGGTGATGATGCAAATGGAAAAGTTCTCTGAATTCTGTGAAGCTTTTTGTAACACCACCCTTATCACCACTTACCAAGAAAACGAGTCCTCGGGTAGAAGCTCAAGCTCCATCACCACCGTTCCCATATTCAATGTGGCACCACCGTGTTTGATTGATTCACCACCGTCCAATGTCAATTTCCCTATCCAACAACAACAACCACCCATGACGCCACCCCTTCAACAACCCAACTTTGTTAACCCCAATAATTCATTTCTTTATGCACCATCATCGAAGCGGAGTTCCATGGCAGCCATGAGGGAAATGATCTTCCAAATAGCGGTGATGCAACCGATTCACATAGACCCGGAATCAATCAAGCCACCGAAGCGCAGGAACGTGAAGATCTCCAAGGACCCGCAGAGTGTGGCGGCGAGGCACAGAAGGGAGAGGATCGGCGAGAGGATAAGGATCCTGCAGAGATTAGTCCCTGGTGGAACCAAAATGGACACTGCTTCTATGTTAGACGAGGCAGCGCATTACGTGAAGTTCTTGAAGAAACAGGTGCAAACGCTGGAACAAGCAGGGGCAAGTAGACCCCTTGGTGGTGGTGGTGGCTTATTCCCTGGAGGGATTTCCGGTGCCAATGTTAGTGATTCTGCTCTGTTGATGAAGGGTTGCCAACAACCTTGTCATATGGTGAAACGAAATGGGTTCTGTGGTTGTTTAGTGTTAATTGGTCCATCGTTTGGTGGGTCGTGA 804 0.49 MEVDTVKTSACDTSSMDTMAVVMMQMEKFSEFCEAFCNTTLITTYQENESSGRSSSSITTVPIFNVAPPCLIDSPPSNVNFPIQQQQPPMTPPLQQPNFVNPNNSFLYAPSSKRSSMAAMREMIFQIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERIGERIRILQRLVPGGTKMDTASMLDEAAHYVKFLKKQVQTLEQAGASRPLGGGGGLFPGGISGANVSDSALLMKGCQQPCHMVKRNGFCGCLVLIGPSFGGS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1058 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Dod05g1058 267 Gene3D - 149 213 IPR036638 GO:0046983
Dod05g1058 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 246 IPR045843 GO:0003700|GO:0006355
Dod05g1058 267 Coils Coil 189 209 - -
Dod05g1058 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
Dod05g1058 267 PANTHER TRANSCRIPTION FACTOR HEC2 1 246 - -
Dod05g1058 267 CDD bHLH_AtIND_like 151 207 - -
Dod05g1058 267 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Dod05g1058 267 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1058 Dod-Chr5 28233532 28234858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1058 76 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 62.346 3.82e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1058 HLH 4.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1058 - - gmx:100805427 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1058 05 28233532 28234858 Dod05g1058 05 28233532 28234858 ECH