Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1046 ATGGATACTGGTGGAGGGTCACTACCAAATCGGGATCAAGAGAACTCTATTATAGTCTCAGCACTCACCCGTGTTATCTCATCTAGTGCTGATGCTTCTAGCGATGATCACAGAACTTGTGCTCCTAGTCTTGTCCTTGATGATGATCATGCTAAGCCCACCAACATTCAAATGCGCGGAAATAAAAAAAAGTCTCATGAGGTACTTCCCAACATATACAACCAGTACCACAAGGAATCAGCCACGCCAACAACATCATGGTCTTCTTGCACAAGTGGGACCCTCCAACCTTACTACCAAGAACACCACCAATCAAGTCTTCCTGGTGCTGACACGTGTCGTGTGTGTCAGATCAAGGGCTTCCTGGGCTGCAGCTTCTTCTTAACGGCCACACGAAAGGATGGAAAGCTAAAGGGGACAGTGGAAGTGGAAGAGGCAGAGAGCAAGGGCATCACTAGGAGGAAGAAGTACAGGGGAGTGAGGCAGAGGACGTGGGGGAAGTGGGTGGCAGAGATTCGAGACCCACGAAGGGCAACTCGGGTATGGCTTGGGACCTTTGAGACCGCTGAGAAAGCTGCAAGGGCTTATGACAAAGCTGCCATAGAGTTTCACGGGGCGAGAGCTAAGACCAATTTTGGGTTATCTGATCATGCAGTGGAGGAGCAGGAGCAAGTTCAAGAGGATGCAGGGGTTAAAGAAAAAATAAAACCAACCATTTTATCGTTCTCATCTCAAAGCCACTGA 744 0.4879 MDTGGGSLPNRDQENSIIVSALTRVISSSADASSDDHRTCAPSLVLDDDHAKPTNIQMRGNKKKSHEVLPNIYNQYHKESATPTTSWSSCTSGTLQPYYQEHHQSSLPGADTCRVCQIKGFLGCSFFLTATRKDGKLKGTVEVEEAESKGITRRKKYRGVRQRTWGKWVAEIRDPRRATRVWLGTFETAEKAARAYDKAAIEFHGARAKTNFGLSDHAVEEQEQVQEDAGVKEKIKPTILSFSSQSH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1046 247 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 PRINTS Ethylene responsive element binding protein signature 179 195 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 ProSiteProfiles AP2/ERF domain profile. 156 213 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Dod05g1046 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 10 229 - -
Dod05g1046 247 Pfam AP2 domain 156 205 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 CDD AP2 155 212 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 SMART rav1_2 156 219 IPR001471 GO:0003700|GO:0006355
Dod05g1046 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 229 - -
Dod05g1046 247 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1046 Dod-Chr5 27515636 27516726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1046 147 212 AP2-EREBP Transcription Factor Family AT5G61890 68.182 5.77e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g1046 AP2 3.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1046 - - lja:Lj0g3v0306799.1 150.599