Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1010 ATGTCTTCATCGAATTCCCCATGCGCCGCATGCAAGTTCCTAAGGCGAAAGTGCACCCAAGAGTGCGTTTATGCGCCGTATTTCCCGCCGGAGAACCCACAACGCTTTGCCTGCGTTCATCGCGTCTTTGGAGCTAGCAATGTTTCCAAGATCCTCAATGAGCTACACGCTTCCCAGCGAGAGGATGCCATCAAGTCCCTTGCCTATGAGGCAGAGGCACGCCTCCGTGACCCCTTTTATGGCTGCGTTGGCTTCATCTCTGTCCTTCAGCAGCACCTCCGCCAGATCCGATTTGACCTCCTCAATGCCAAGAAGGAACTTTCCACCTACGTTGGCCCTCAGGCCATGCAGGAGCTCCTCTCTCCTCAGGCACTCCAGGGGATTCTCCTCGAGACTAATGCCATGGGAAATCCCTTGGCTTCAGCTATGCTTTATCCTTCTTTTAGTGGGAATAAGGCACAACTTGTAACTTCTGTGCCACATAACACACAACTAGTTGTACGAGACTTGCAGCAACAGGAGTTGCTAGAGGCCCAGCAACTCGCAGTTGATGTGGCTACTCGAGAACAACAACATGCTATTATGAGGGCTTACGAGCAGCAGCAACAAGAGATTCTGAGACTTAATACTGGGTTTGAACTTGCTGCATGTTCAATAGCTGTTGCGGTTGCTGGTGGTGGTAGTGCTGGAAGTGGAGGGTTTAGCCAGATTAGTGCACATTCTGGTGGTGAAGCTGAGATGACTCCTTCACTGGTGCTAGGAACATACGGCAATGTTAGTGCATATCAAATGCAACAACAGCCACATCATGGAGGGGAGCATTGTGTTGGTCATGGTCATCACCACCCTATTGAAGCGTAG 861 0.5087 MSSSNSPCAACKFLRRKCTQECVYAPYFPPENPQRFACVHRVFGASNVSKILNELHASQREDAIKSLAYEAEARLRDPFYGCVGFISVLQQHLRQIRFDLLNAKKELSTYVGPQAMQELLSPQALQGILLETNAMGNPLASAMLYPSFSGNKAQLVTSVPHNTQLVVRDLQQQELLEAQQLAVDVATREQQHAIMRAYEQQQQEILRLNTGFELAACSIAVAVAGGGSAGSGGFSQISAHSGGEAEMTPSLVLGTYGNVSAYQMQQQPHHGGEHCVGHGHHHPIEA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1010 286 Pfam Lateral organ boundaries (LOB) domain 7 101 IPR004883 -
Dod05g1010 286 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Dod05g1010 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 277 - -
Dod05g1010 286 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1010 Dod-Chr5 24951985 24953070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1010 1 250 AS2 family AT5G66870 47.388 3.51e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g1010 LOB 1.7e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1010 05 24951985 24953070 Dod05g1010 05 24951985 24953070 ECH
Dod02g0673 02 8759937 8762659 Dod05g1010 05 24951985 24953070 PCT