Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1009 ATGTCGTCATCAAATTCCCCGTGCGCCGCATGCAAGTCCCTAAGGAGAAAGTGCACGCAAGAGTGTGTGTACGCGCCGTACTTCCCGCCAGACAACCCACAACGCTTTGCCTGTGTCCATCGCGTCTTTGGAGCCAGCAACGTTTCCAAGATCCTCAATGAGCTTACTGCCTCCCAGCGAGAGGATGCCGTCAAGTCCCTCGCCTATGAGGCGGAGGCACGCCTCCGTGACCCTGTTTACGGCTGCGTCGGCTTCATCTCCGTCCTTCAGCAACACCTCCACCAGATCCGATCCGACCTCCTCAACGCCAAGAAGGAACTTTCCACCTACGTCGGCCCTCAGGCCATGCAAGAGCTCCTCTCCCCTCAGGCATTCCAGGGGATTCCCCTCGCGACTAACGCCATAGGAAATCCGTTGGCTTCAGCTGTTCTTTATCCTTCTTTTAGTGGGAATACGACACAGCTTGTAACAGCTATGCCGCATAACACAAAACTAGTTATGCGGGACCCGCAGCAACAGGAGTTTTTGGAGGCCCAGCAACTCGCAGTTGTTGTGGCTGCTCGAGAACAACAATATGCTATGATGAGGGCATATGAGCAGCAGCAACAGGAGATTCTGAGATTCAATGCTGGGTTTGAACCTACCGCAGGTTCAATAGCTGTTACGGTTGCTGGTGGTGGTAGTACTGGAAGCGGAGGGTTTGGCCAGATTGGTGCACATTCTGGTGGTGAAGCTGAGATGACTCCTTCACTGGCACTAGGAACATATGACAATGTTGGTGCTTATCAAATGCAACAGCAAGCACAGAATGAAGGGGAGGATCGTGTTGGTCATGGTCATCACCCCCCTATTGAGGCGCAGCTTCTGCTTTCACCGCAGCAACAGTCACAACAACAGCAACAACAGTCAGAGAGTGATGAAGGTAGAAGCGTCGGCCCTTCTAGTTGA 948 0.5316 MSSSNSPCAACKSLRRKCTQECVYAPYFPPDNPQRFACVHRVFGASNVSKILNELTASQREDAVKSLAYEAEARLRDPVYGCVGFISVLQQHLHQIRSDLLNAKKELSTYVGPQAMQELLSPQAFQGIPLATNAIGNPLASAVLYPSFSGNTTQLVTAMPHNTKLVMRDPQQQEFLEAQQLAVVVAAREQQYAMMRAYEQQQQEILRFNAGFEPTAGSIAVTVAGGGSTGSGGFGQIGAHSGGEAEMTPSLALGTYDNVGAYQMQQQAQNEGEDRVGHGHHPPIEAQLLLSPQQQSQQQQQQSESDEGRSVGPSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1009 315 MobiDBLite consensus disorder prediction 288 315 - -
Dod05g1009 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 279 - -
Dod05g1009 315 MobiDBLite consensus disorder prediction 265 315 - -
Dod05g1009 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 279 - -
Dod05g1009 315 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Dod05g1009 315 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1009 Dod-Chr5 24945724 24946671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1009 1 250 AS2 family AT5G66870 50.746 8.01e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g1009 LOB 2.9e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1009 05 24945724 24946671 Dod05g1009 05 24945724 24946671 ECH
Dod05g1009 05 24945724 24946671 Dod02g0673 02 8759937 8762659 PCT