Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0978 ATGGGTTGGTTTACCAAGTTGCTTAAGGGGTCGAACCTTAAATCTTCAGGAGGACAATACCAAGGGAAATATGGAGGTGGCAGGATTTCAGATAATAATGATCATTCAGCGGATGATTTGACGGATATTGAGAAAGAGGAAATTGATTGTGCAATTGCGCTTTCTCTTTCAGAGGAAGATCAGAAAGGGAAAAAAATTATTGAGGATGTCTCTCAATCTTCCGACGATGAAGAACTGTGTGATATTGATGAGGAGGAAGATGAATATCCAGGTAAAGTTCAAGAAGAGGAAGATGACCATCTTACTAAAATTCAACAGGTTGAAGACAAACTTCTTGCAGAAGCTCAACTTGAGGAAGATGAACAACTTGCCAGAGCAATTCAAGAAAGTTTGAACATTAGTTCAGCTCAACCTGAAAGTGATTCTTTGTTTCAACCATTTCCACACCTCTCTCCACCTGTATACAGAATATGCACTGGCTGCAATGCAGAGATTGGCCATGGCAGATTTTTGAGTTGCATGGGAGGTTTCTGGCATCCAGAATGTTTCTGCTGCCATGCTTGCTATCTGCCAATCACTGATTATGAGTTTTCGATGTCTGGAAATCGTCGTTACCATAAATCTTGCTACAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCAAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCTTCACATGAGCGTGATGGCACCCCTCGTTGTTGTAGCTGTGAAAGAATGGAGGCAAGGGACACAAAGTATCTTTTGCTTGAAGATGGTCGAAAGCTGTGTCTAGAATGTCTAGACTCGGCTATTATGGATACTCACGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAATAGAGCAGCAAATTCCTATGCTTTTAGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCGGAAACCAGAGGACTTTGCTTGTCAGAGGAGCAAACTGTCACCACTATTTTAAGGAGACCAAGGATTGGGGCAGGCTACCGAGTCATAGATATGATAACCGAGCCTTACAGGCTGATCCGGCATTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGTTATTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGGTATGGCAATTTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGACGTATTCTGGGTCTGGGAGCGATCTTGCATCATCGTCATCATCATCCTCTTCATCACCTTCCTCGTCTTCTACATCATCAAAGAAGGGTAAACGGTCTGAGTTTGAGAAGAAGCTTGGTGAGTATTTTAAACACCAGATTGAGTCAGATCGCTCATCAGCTTATGGAGATGGATTCAGACAGGGTAATCAGGCTGTGCTCAAGTATGGACTCGGAAGTACCCTTGATCATATCCGGATGACAGGAAGCTTTCCATATTGA 1581 0.4276 MGWFTKLLKGSNLKSSGGQYQGKYGGGRISDNNDHSADDLTDIEKEEIDCAIALSLSEEDQKGKKIIEDVSQSSDDEELCDIDEEEDEYPGKVQEEEDDHLTKIQQVEDKLLAEAQLEEDEQLARAIQESLNISSAQPESDSLFQPFPHLSPPVYRICTGCNAEIGHGRFLSCMGGFWHPECFCCHACYLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEARDTKYLLLEDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSETYSGSGSDLASSSSSSSSSPSSSSTSSKKGKRSEFEKKLGEYFKHQIESDRSSAYGDGFRQGNQAVLKYGLGSTLDHIRMTGSFPY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0978 526 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 118 137 IPR003903 -
Dod05g0978 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 183 - -
Dod05g0978 526 SMART uim 43 62 IPR003903 -
Dod05g0978 526 SMART uim 118 137 IPR003903 -
Dod05g0978 526 CDD LIM_DA1 158 210 - -
Dod05g0978 526 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Dod05g0978 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Dod05g0978 526 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 526 - -
Dod05g0978 526 Gene3D Cysteine Rich Protein 155 217 - -
Dod05g0978 526 PANTHER PROTEIN DA1-RELATED 2 1 526 IPR045218 -
Dod05g0978 526 SMART lim_4 157 209 IPR001781 -
Dod05g0978 526 Pfam LIM domain 158 212 IPR001781 -
Dod05g0978 526 MobiDBLite consensus disorder prediction 447 468 - -
Dod05g0978 526 MobiDBLite consensus disorder prediction 447 473 - -
Dod05g0978 526 Pfam Protein DA1 307 521 IPR022087 -
Dod05g0978 526 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0978 Dod-Chr5 22015778 22022735 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod05g0978 DA1-like 2.3e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0978 - - gmx:100806605 870.922