Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0910 ATGGAGAATATGGCAACCATTAATGATGCAACAAATGATGTTAGCGGCTTTCATGGAATGATTGGTGGCACAGAAATAGGTGGCAGCGGTGGTAGCAGTGGCGGTGGTGGTGGTGGGGTGGAGGAGATAACTTTAAAAAAGGGTCCTTGGACAGCCGCAGAGGATGCCATTCTAATTGATTATGTGACAAAGCAAGGTGAAGGGAATTGGAATGCGGTGCAAAGGAACACAGGGCTGGCTAGATGTGGCAAGAGTTGTAGGCTTAGATGGGCTAACCATCTGAGACCTAATTTGAAAAAAGGTGCCTTTTCCCAGGAGGAAGAGAAGCTCATCATTGAACTCCATTCTCAATTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGGAGAACTGATAATGAAATCAAGAACTATTGGAACACAAGGGTGAAGAGGCGCCAAAGACAAGGCCTCCCTCTATACACAGATGATCATGACCATCCTACAACACCAACCACCCCATCAGGATCAAATGCCAACACTGTTGCCACCAAGTTTGAGTTTTTCAAGCAAAACCACCTCCATTCACCAACAACCACACCCCACCACCACTCTCCCCTCTCTTCACCACTCCAACATAGAGCGCCATCCTATTCCTCTCATACCTTCTTAGACCCAACATTTTCCCATCTCTCATCTTCACATTCTCCTATCTCTCCTTCTCTTTCCTTCACCTTCCAGAGACCCACACCTTTGTTGTGTAGCCCACTTCGCTTCAAACGTTATCGCTCCTCTCCAAGCTATAACCCTCAGGCTTCTCCTACTAGAACCATGATCCATGAATCCCCTATGACCTCTACCACCACCAATACCCAAGTAGCTGATCTTGATGCATTTAGGTTCCCAGTTCAACTCAACTCCAGTTTCTCCCATTTTTTCCAAAACCCTTTGTTAGATTCTAACCGGGGGGTTTCTTCTCCTTCCCATTCTACTTTCCCAACCAAGTTTGAGCTCCCCTCAAACCATTATTCACAAGTAGAGGCAGAGGTTAATAATAAGCTTAATGTTGAGTTCAATGATCCTTCTTTACAGACCAATAGTGGGTTGTTGAGGGATCTTCTATTTGAAGCTCAGGCCTTGACATCTAGCCAGAATTCAAAGAAGCGAAGTTACTTGAGCTTGAACGAAGGAAATAATAATGTCTTTGATGGATTCCAAGGCTGTGATGACTTGCCTCTGAGCTCTCTTTGCTGGTCTTCGACTTCAGGACTGAAAGCAAAGGAAGAAGCAATAGACCTAAGCAAATCCATGAATGAGGACTTGTCAACACTGCTTACCGTAATGCCTTCCACCATGCAAGGTCAAGATTGGCATCATAACAGTGAAATAGAAATCTCCAACGTCCAATCTTCTTGTGTCATGACAGATGACAATTTTGGACTTGATATCAAGCCCATAGCTTCATTATTTCCTCTCACTAACACAACAAATCATAATGAAAACTCGAGCTGCTACTCCTGGGACAATTTACCTAGTTTATATTGA 1530 0.4438 MENMATINDATNDVSGFHGMIGGTEIGGSGGSSGGGGGGVEEITLKKGPWTAAEDAILIDYVTKQGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSQEEEKLIIELHSQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYTDDHDHPTTPTTPSGSNANTVATKFEFFKQNHLHSPTTTPHHHSPLSSPLQHRAPSYSSHTFLDPTFSHLSSSHSPISPSLSFTFQRPTPLLCSPLRFKRYRSSPSYNPQASPTRTMIHESPMTSTTTNTQVADLDAFRFPVQLNSSFSHFFQNPLLDSNRGVSSPSHSTFPTKFELPSNHYSQVEAEVNNKLNVEFNDPSLQTNSGLLRDLLFEAQALTSSQNSKKRSYLSLNEGNNNVFDGFQGCDDLPLSSLCWSSTSGLKAKEEAIDLSKSMNEDLSTLLTVMPSTMQGQDWHHNSEIEISNVQSSCVMTDDNFGLDIKPIASLFPLTNTTNHNENSSCYSWDNLPSLY* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0910 509 Gene3D - 46 99 - -
Dod05g0910 509 MobiDBLite consensus disorder prediction 161 175 - -
Dod05g0910 509 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Dod05g0910 509 MobiDBLite consensus disorder prediction 260 280 - -
Dod05g0910 509 SMART sant 46 96 IPR001005 -
Dod05g0910 509 SMART sant 99 147 IPR001005 -
Dod05g0910 509 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Dod05g0910 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Dod05g0910 509 Gene3D - 102 148 - -
Dod05g0910 509 MobiDBLite consensus disorder prediction 151 175 - -
Dod05g0910 509 MobiDBLite consensus disorder prediction 189 211 - -
Dod05g0910 509 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 31 504 - -
Dod05g0910 509 CDD SANT 49 94 IPR001005 -
Dod05g0910 509 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Dod05g0910 509 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Dod05g0910 509 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Dod05g0910 509 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 31 504 - -
Dod05g0910 509 MobiDBLite consensus disorder prediction 21 42 - -
Dod05g0910 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Dod05g0910 509 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0910 Dod-Chr5 16893056 16896014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0910 26 493 MYB Transcription Factor Family AT4G26930 39.121 2.51e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g0910 Myb_DNA-bind_6 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0910 - - lja:Lj6g3v0869180.1 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0910 05 16893056 16896014 Dod05g0910 05 16893056 16896014 ECH