Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0850 ATGAGAACTCGTAATGCCGATTCCTCTTCCAAATCCGCAACCCCTAAGAAGACACCGCCGGCGAGAAAAGCCGCCGCCAAAACCGCCGGAGAATCCCCTGCGGCGAAGCGCACTCCCGCCGCCAAAACGAGGCAGATCAAGAAGAAGGACGCCTCGCCTGCATCCAATCCGATCCCCGATTCCCATCCGGAACAAACGCCAGATGAGCTGAAATTGTGTGAGGCTGGTACCGCCACAAACTCTTCAAAGAGGAAGGCACCGGGGAGACCAAGAAAAGCAGTTGCCACTCCGAAACTGGTAGAGCAATTGGAGGCAGTAGCAGGCGAAACTCCAGTTGTGGATAACTCTGGGGCAGCAGAGAAACTGGAAGAGCCTCAAGATGTTGAAGTAGTAGTAGTCCATGCAAGTAATATTGACGGTGAGAAAGCGGGGGAACAAGGTGTTGGGCAAGCTGAAGAGAAGGAACAAAAGCCTATGGAGGTGGATGAACCTATTGTTGAGAAAGTTTGTGAATCGGCAGAGAAGGGAAATAATGCAGTGGAGGTTGAAGTGATTGCTTCTCAGGATGCCTCGAGTTCTTTCAAACGGCCAGAGCGCACGCTTGTGGACCTTAATATATCAGTGGATGATGAAGATGCTATTGGTCCATATCAAGGAGAGAAAGGAGATGAAGAGTTGAAGGAACAGAAGGGAGATGAAGATATGAAGGGATCGGAGGGAGAAAAAGGAGGGGAAGAGTTGAAGGAACAGGAGGGGGTGAAAGAAGAGGAAGAGTTGAAGGAACAAGAGGGAGAGCAAGGAGAGAAAGAGTTGAAGGAACAAGATGGAGAGAACAAAAAGGAAGAATTGAAAGAGCAGGACAGTGATAAAGGAGAGGAAGCATTGAATCAACTACAGGGAGATAAAAGAGAGGAAGAATTCAAACAACAGGAGGCAGAGAAAGCAAAGGAAGAATCCAAAGAGGATGAAACGAACATTATTGGACACGGAAAACATTCTAATACTGAGTGTTTTAATGTAAAAGTCAAAGACCATTTGCAAAAACATGTTAATCCTAGGAAAGATGATGATGAAGGAACGAAGAGCAGTGAAAAGCTAAATCTTGGAGAACAAGGTGGGGAGGAGCATATTGAGGAAGATCAGGAGGAAGATCCAGATGAACCTCCTGAAGAAACTGAGGCACTGGAAGAGGAGCATACGGAATTGGAGGCCATTGCAAAACAGCGAAAGATTAAGAAAGAACATGAGATATTTGTTGGAGGGCTTGATCGAGATGCTACGGAGGAAGATCTGAGAAAAGTTTTTCAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTGCATAAAAATTCATCAACAAATAAAAATAAGGGCTATGCATTCGTGAAGTTTGCTAGTATGGAACATGCAAAGAAAGCTTTGTTGGAAATGAAGAACCCTGTTATTCGTGGTAAAAGATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAGCTATAAAACAGAAGTTGAAGGATTATGGTATTGAAGAGGTTGAAAACATTACGCTTGTGCCAGATGTTCAACATGAAGGATTGAGCCGTGGCTTTGCATTCCTCGAGTTCTCATGTCATGCTGATGCTATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGCCATCTTTGGCCATCCTGAGCGAAGTGCCAAGGTAGCCTTTGCTGAACCCAATCGTGAACCAGACCCAGAGATAATGGCACAGGTTAAGTCTGTGTTTATTAATGGTCTTCCCCCTCGTTGGGATGAAGATCACGTTAAGGAGCTGTTTAAATCTTATGGTGAAATTGTAAGAATTGTACTAGCACGGAATATGCCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTCTCAACACATGAAGCTGCTCTAGCTTGTGTTGAAGCTGTAAATAAATCTGATTTGTCTGATGGGGGATCAAAGATAAAAGTAAGAGCTAGGCTATCAAATCCATTGCCTAAAACACAGGCTGTTAAGGGTGGCATGTGTGGTGGGTTCCGAATTGATCATACCAGGACTGGAGCCTTTGCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAGCCCTTCAACAATTGGGGAAATATGAACAGGGACAGGAATGTATATCGTGGTGGACACAGGCAAATTGGAAGAATGGGTTTCCGGAATGACCTTGACTTCAATATGTATCCAGATTTCCATCACAGGCAATTTAGTCCACAAGCAGGAGCAGTAAGGGGTGGACATTATCCTAGTAGCAGAGGTGCTGCATTTGCTGGACCTTATCGTGATAGAGAATGGTATGGCATATCTGCGGAAGGCCCTAGTGAGCCTTTTCCTTCAAGAAGGCCCTATTCCCCAGGTGGACAGTTCAACAGGCCTTTTGTGGGAGGGCATTTTGATGATCCGTATTTTTATGATGACAATGTGCATGGGATGAAACGCCCATTTTATATGACTGATCCTGAACCTGATTATATGGGACCTAACAGACTGCGCCCTCGATTGGATTATGCAGATCCATCTTTATTTCATGAAAATCATTACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCACCTGACTATTATGGTTCTGATTATGGCGGAGGCCCATATTCTACTTTTTATGGTGGTGATGGCTCATCACATGGGCGTGGGTACTACCATTAG 2730 0.4502 MRTRNADSSSKSATPKKTPPARKAAAKTAGESPAAKRTPAAKTRQIKKKDASPASNPIPDSHPEQTPDELKLCEAGTATNSSKRKAPGRPRKAVATPKLVEQLEAVAGETPVVDNSGAAEKLEEPQDVEVVVVHASNIDGEKAGEQGVGQAEEKEQKPMEVDEPIVEKVCESAEKGNNAVEVEVIASQDASSSFKRPERTLVDLNISVDDEDAIGPYQGEKGDEELKEQKGDEDMKGSEGEKGGEELKEQEGVKEEEELKEQEGEQGEKELKEQDGENKKEELKEQDSDKGEEALNQLQGDKREEEFKQQEAEKAKEESKEDETNIIGHGKHSNTECFNVKVKDHLQKHVNPRKDDDEGTKSSEKLNLGEQGGEEHIEEDQEEDPDEPPEETEALEEEHTELEAIAKQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFASMEHAKKALLEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEEVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDAIFGHPERSAKVAFAEPNREPDPEIMAQVKSVFINGLPPRWDEDHVKELFKSYGEIVRIVLARNMPTAKRKDYGFVDFSTHEAALACVEAVNKSDLSDGGSKIKVRARLSNPLPKTQAVKGGMCGGFRIDHTRTGAFARSGRGFGRGRQPFNNWGNMNRDRNVYRGGHRQIGRMGFRNDLDFNMYPDFHHRQFSPQAGAVRGGHYPSSRGAAFAGPYRDREWYGISAEGPSEPFPSRRPYSPGGQFNRPFVGGHFDDPYFYDDNVHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPSLFHENHYHDSFGAGSRQYPPDYYGSDYGGGPYSTFYGGDGSSHGRGYYH* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0850 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 373 902 - -
Dod05g0850 909 Coils Coil 295 325 - -
Dod05g0850 909 Gene3D - 339 489 IPR012677 -
Dod05g0850 909 MobiDBLite consensus disorder prediction 214 329 - -
Dod05g0850 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 493 IPR000504 GO:0003723
Dod05g0850 909 MobiDBLite consensus disorder prediction 139 162 - -
Dod05g0850 909 CDD RRM_SF 497 560 - -
Dod05g0850 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 593 673 IPR000504 GO:0003723
Dod05g0850 909 MobiDBLite consensus disorder prediction 1 97 - -
Dod05g0850 909 CDD RRM_SF 417 485 - -
Dod05g0850 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 595 659 IPR000504 GO:0003723
Dod05g0850 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 497 561 IPR000504 GO:0003723
Dod05g0850 909 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 485 IPR000504 GO:0003723
Dod05g0850 909 MobiDBLite consensus disorder prediction 375 398 - -
Dod05g0850 909 Gene3D - 579 738 IPR012677 -
Dod05g0850 909 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 495 580 IPR000504 GO:0003723
Dod05g0850 909 SMART rrm1_1 496 573 IPR000504 GO:0003723
Dod05g0850 909 SMART rrm1_1 594 669 IPR000504 GO:0003723
Dod05g0850 909 SMART rrm1_1 416 489 IPR000504 GO:0003723
Dod05g0850 909 MobiDBLite consensus disorder prediction 146 162 - -
Dod05g0850 909 CDD RRM_SF 595 669 - -
Dod05g0850 909 MobiDBLite consensus disorder prediction 186 398 - -
Dod05g0850 909 Gene3D - 494 578 IPR012677 -
Dod05g0850 909 SUPERFAMILY RNA-binding domain, RBD 416 560 IPR035979 GO:0003676
Dod05g0850 909 MobiDBLite consensus disorder prediction 336 374 - -
Dod05g0850 909 PANTHER NUCLEOLIN-LIKE ISOFORM X1 373 902 - -
Dod05g0850 909 SUPERFAMILY RNA-binding domain, RBD 578 675 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0850 Dod-Chr5 14373788 14380309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0850 417 661 Eukaryotic Initiation Factors Gene Family AT2G23350 24.506 1.56e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0850 - - gmx:100784338 1097.42