Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0819 ATGGCGGGTTTGTTCTCACTAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGTAGTAGCAGCGGAAACCAAGACCCTGAACAACAACATCATAACACCCAAAGCACCGAAATCGCTCCTCCTGAGACCATATTCTGGTACAACAAAAGCGACGACGTTTCGTCATACCGCGGCTTCGAGCTATGGAACCAGCAACACCACCAACAGTTGATACCTCATCACGCGCGCCCTCTCCTCCACCGAGATCTCTACTCGTCTGCCGCGGCGCTGGGCGTGGGGCCGAGCAGCGCTTCCGATGACCAGTCGTCGTCAAGATCGGCAGCGGCGTTCATGGCGATGCGGTCCGCCGTGGCGGAAGTGGGAGGAGCAGGAGGGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGACTGCCCTCACATGAGGTGCAGGTCTTGCTGCAAGAGTCGAGGATACGAGTGCCAGACCCACGTCAAGAGCACATGGGTCCCAGCAGCCAAGCGCCGCGAGCGCCAGCAGCAGCTTGCTGCCTTGCAGGAGCAGCAGCAGCGAGAGATTTCCAAGAGACCCAGAGATGGCAACAACCCTGCTGCTGCAGCCACTTCTTCAGCTCTTGCTTGCACTCGTTTGCCCTCATCTGAGCAAGGGAATTTTCCTTCAGTGGTGAGCTCTCCTGCGGAATTCAGGTGCGTGAGGGTTAGCTCCGTGGACGATCCGAGCGACCAGTATGCATACCAAACAGCTGTGAACATTGGAGGGCATGTGTTCAAAGGGATTCTCTATGACTATGGTCCTGACAATGACAATAATTACGTGGGAGGGGAGAGCTCCGCCGCTGCTGTCGCCGGAGCTCAGCCCTTGAACCTCATTGCCGCCGCAGCCACCACCACGTCCCCAACAGCCGCCGTTGTCTCCTCCACTGGAGCACTGGTAGATTCATCTTCCTTGTACAATCCAGCTCCACTTAACACCTTCATGGCTGGCAGTGGTACGCAATTCTTCCCTCACCCAAGATCTTAA 1023 0.5728 MAGLFSLGGGGGGGGGRGSSSGNQDPEQQHHNTQSTEIAPPETIFWYNKSDDVSSYRGFELWNQQHHQQLIPHHARPLLHRDLYSSAAALGVGPSSASDDQSSSRSAAAFMAMRSAVAEVGGAGGISCQDCGNQAKKDCPHMRCRSCCKSRGYECQTHVKSTWVPAAKRRERQQQLAALQEQQQREISKRPRDGNNPAAAATSSALACTRLPSSEQGNFPSVVSSPAEFRCVRVSSVDDPSDQYAYQTAVNIGGHVFKGILYDYGPDNDNNYVGGESSAAAVAGAQPLNLIAAAATTTSPTAAVVSSTGALVDSSSLYNPAPLNTFMAGSGTQFFPHPRS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0819 340 MobiDBLite consensus disorder prediction 17 41 - -
Dod05g0819 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 338 IPR007818 GO:0003700|GO:0006355
Dod05g0819 340 PANTHER PROTEIN SHORT INTERNODES 1 338 - -
Dod05g0819 340 MobiDBLite consensus disorder prediction 1 42 - -
Dod05g0819 340 MobiDBLite consensus disorder prediction 167 201 - -
Dod05g0819 340 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 219 266 IPR006511 -
Dod05g0819 340 Pfam Domain of unknown function (DUF702) 125 267 - -
Dod05g0819 340 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 127 169 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0819 Dod-Chr5 13485284 13488425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0819 1 329 C2H2 Transcription Factor Family AT5G66350 46.591 2.93e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dod05g0819 DUF702 2.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0819 - - ahf:112720334 435.261