Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0791 ATGAAAGGGAATAACTGCCCATTTGACCATGAGCTCTCCAAGTACCCTTGCGACAATTTTATGTCTAGAGGCTTTTGTAGTAGAGGGGATGCCTGCTTGTTTTCACACCAGTTACCACCCAAGGAAGACGGTCTTACACCTTCAGGAGTTTATAGACCAGAGTTGAAGTCTCCTCTATTGTTAGGAAATGCAAGTTTCAGTATGCCATCTAACAATCGCGGCTGCAGCTCTGTCCAGCAAACCCACTTCATCAATTCTATGGGAATTCTTTCTCATATTGATCCAGAAGATAAGGTGACTGTACGAAAGCACGTTGCACCTACACCCAAGGGAATTCGTTTCATCAACATTGAAAAGTCATCATTGCCCCGTCCTAGTACAACAGAACAAGGCTTGATAACCCCAAACAAGGAAAGTATTGACCACATTGGAGCTTGTTCTGACCAAAGTGCGTTTGGCACACACCAAACTCTAGGGGAAACTCCTAAGAAATTTCCAGCTGTCGCACCTAAGGGAGCTAATTTCCTTTGTTTTGGCAAAGGTTCTATATGTAGTTTTGGAAGTTCTATTAGCTCCCTTCTGAATAAGGAAAATGATATCAAGGTGCCTCAGTTTCTGGACTTTGGTTTGTCTAATCATGAAGGTTCATACTTACAAAAGGATGATTGCAACAATTGCAACCCCATCTATGCTCCAGTTGCAAACCCATCTATGCTTCTGGTTTCTCAATTTGGTTTGCAACGATCTTCATAA 753 0.4236 MKGNNCPFDHELSKYPCDNFMSRGFCSRGDACLFSHQLPPKEDGLTPSGVYRPELKSPLLLGNASFSMPSNNRGCSSVQQTHFINSMGILSHIDPEDKVTVRKHVAPTPKGIRFINIEKSSLPRPSTTEQGLITPNKESIDHIGACSDQSAFGTHQTLGETPKKFPAVAPKGANFLCFGKGSICSFGSSISSLLNKENDIKVPQFLDFGLSNHEGSYLQKDDCNNCNPIYAPVANPSMLLVSQFGLQRSS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0791 250 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 16 36 IPR000571 GO:0046872
Dod05g0791 250 Gene3D - 1 44 - -
Dod05g0791 250 ProSiteProfiles Zinc finger C3H1-type profile. 11 39 IPR000571 GO:0046872
Dod05g0791 250 PANTHER PROTEIN SUPPRESSOR OF SABLE 1 191 - -
Dod05g0791 250 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 1 191 IPR045124 GO:0003723|GO:0045892
Dod05g0791 250 SMART c3hfinal6 12 38 IPR000571 GO:0046872
Dod05g0791 250 SUPERFAMILY CCCH zinc finger 15 37 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0791 Dod-Chr5 12587401 12588568 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g0791 zf-CCCH 4.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0791 - - cam:101495956 232.261